connor-lab / vaporView external linksLinks
☆11Jun 29, 2023Updated 2 years ago
Alternatives and similar repositories for vapor
Users that are interested in vapor are comparing it to the libraries listed below
Sorting:
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 3 months ago
- FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.☆13Feb 3, 2026Updated last week
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 2 months ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Mar 2, 2023Updated 2 years ago
- Simple Manipulation Of Trees☆13Aug 16, 2025Updated 5 months ago
- Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.☆15Dec 11, 2024Updated last year
- Script for parsing SAM/BAM files for coverage statistics☆16Jun 13, 2023Updated 2 years ago
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆86Feb 5, 2026Updated last week
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆18Feb 3, 2026Updated last week
- finding conserved regions in highly diverse genomes☆15Jun 1, 2025Updated 8 months ago
- ☆21Jan 23, 2026Updated 3 weeks ago
- Virus Identification☆25May 26, 2025Updated 8 months ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Sep 12, 2021Updated 4 years ago
- ☆26Mar 6, 2025Updated 11 months ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25May 30, 2023Updated 2 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Jul 18, 2025Updated 6 months ago
- A collection of documented examples using TreeTime☆22Jul 30, 2019Updated 6 years ago
- ☆26Aug 2, 2023Updated 2 years ago
- Influenza data pipeline to automate genotyping assignment☆39Oct 14, 2025Updated 4 months ago
- Metagenome analysis using the Kraken software suite☆36Sep 29, 2022Updated 3 years ago
- ☆10May 14, 2025Updated 9 months ago
- 🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens☆91Jan 28, 2026Updated 2 weeks ago
- Assemble bacterial isolate genomes from Nanopore reads☆127Jan 22, 2025Updated last year
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆41Feb 5, 2026Updated last week
- catalog for long-read sequencing tools☆32Feb 14, 2023Updated 3 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆37Jan 22, 2026Updated 3 weeks ago
- Week 3 of the OSU CoMS Webinar: Introduction to Amplicon Sequencing (QIIME, DADA2, mothur) and Ecological Statistics☆10May 28, 2023Updated 2 years ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆49Feb 5, 2026Updated last week
- Learning the basics of reading and writing files in Python.☆10Mar 16, 2021Updated 4 years ago
- Standardized and Automated MetaBarcoding Analyses workflow (Mirror)☆13Jun 28, 2023Updated 2 years ago
- ☆10Jan 20, 2022Updated 4 years ago
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 2 months ago
- SeqSero2☆39Oct 1, 2025Updated 4 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆33Dec 4, 2025Updated 2 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Sep 23, 2025Updated 4 months ago
- ☆155Jun 18, 2024Updated last year
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆37Feb 7, 2026Updated last week
- snipit: summarise snps relative to your reference sequence☆166Jan 13, 2026Updated last month
- ☆11Apr 5, 2021Updated 4 years ago