Tool for analysing viral diversity from High Throughput Sequencing
☆12Nov 20, 2025Updated 11 months ago
Alternatives and similar repositories for DiversiTools
Users that are interested in DiversiTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and H…☆10May 3, 2018Updated 8 years ago
- Set of tools for viral metagenomics.☆18Aug 17, 2026Updated 2 months ago
- Base for the Viral Genomics and Bioinformatics Repository☆17Jul 5, 2024Updated 2 years ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆21Sep 23, 2026Updated last month
- ☆12Dec 22, 2025Updated 10 months ago
- Computes a consensus sequence with wobbles, ambiguous bases, and in-frame insertions, from a NGS read alignment.☆18May 14, 2018Updated 8 years ago
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 5 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated 3 months ago
- Classify sequencing reads using MinHash.☆47Apr 6, 2020Updated 6 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- ☆11Jun 29, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PANPROVA: PANgenomic PROkaryotic eVolution of full Assemblies☆10Jun 14, 2026Updated 4 months ago
- ☆29Sep 28, 2021Updated 5 years ago
- A command line tool for quickly visualizing phylogenetic tree via a single command in terminal.☆10Apr 9, 2019Updated 7 years ago
- design common and specific primer for LAMP using the whole genome☆15Feb 12, 2026Updated 8 months ago
- collection of data structures and algorithms☆19Mar 19, 2019Updated 7 years ago
- Pipeline to build a massive tree from global data☆11Jul 25, 2024Updated 2 years ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆11Mar 2, 2023Updated 3 years ago
- genetic distance plotting for recombination events analysis☆10Jul 14, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Feb 15, 2023Updated 3 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Investigating the gut virus communities associated with colon cancer.☆11Sep 20, 2020Updated 6 years ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 3 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆119Aug 21, 2023Updated 3 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 3 years ago
- Reconstruction of transmission trees using genomic data☆72Jul 14, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆25Feb 22, 2026Updated 8 months ago
- Canalization of the evolutionary trajectory of the human influenza virus☆11Dec 30, 2019Updated 6 years ago
- finding conserved regions in highly diverse genomes☆16May 25, 2026Updated 5 months ago
- Simple Manipulation Of Trees☆13Aug 16, 2025Updated last year
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆28Dec 15, 2025Updated 10 months ago
- A pipeline for viral identification from metagenomic samples☆29Oct 15, 2017Updated 9 years ago
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago