☆30Mar 6, 2025Updated last year
Alternatives and similar repositories for viridian
Users that are interested in viridian are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.☆11Jan 6, 2026Updated 9 months ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆42Apr 6, 2026Updated 6 months ago
- Simple-to-use interactive comparison of two bacterial genomes☆28Jan 30, 2026Updated 8 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 4 months ago
- VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data☆23Oct 21, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Identify Variants of Concern from metagenomic samples of SARS-CoV-2☆13Sep 9, 2021Updated 5 years ago
- app to collapse Pango lineages for reporting☆13Oct 2, 2026Updated last week
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆46Jul 2, 2026Updated 3 months ago
- REcombination BARcode detector.☆17Apr 2, 2024Updated 2 years ago
- Visualize microbial evolution at the SNP level!☆18Aug 12, 2025Updated last year
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Sep 14, 2026Updated 3 weeks ago
- Reference-based consensus creation☆61Sep 29, 2026Updated last week
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25May 30, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A high-performance in-silico PCR tool for primer matching and product extraction from FASTA and GenBank sequences.☆19Feb 25, 2026Updated 7 months ago
- Repo for PrimerSchemes☆20Sep 14, 2026Updated 3 weeks ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆57Oct 2, 2026Updated last week
- A repo with just adapter sequences☆14Jul 7, 2025Updated last year
- Ultra-rapid detection of viral variants directly from sequencing data☆48Sep 16, 2026Updated 3 weeks ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆21Sep 23, 2026Updated 2 weeks ago
- Rapid determination of appropriate reference genomes.☆103Jan 22, 2025Updated last year
- Simple Manipulation Of Trees☆13Aug 16, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆38Jan 12, 2026Updated 8 months ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 10 months ago
- ☆20Sep 16, 2026Updated 3 weeks ago
- TAXnomic Profile Aggregation and STAndardisation☆43May 2, 2026Updated 5 months ago
- Interpretative standards for AMR genotypes☆32Updated this week
- Fast pairwise transmission inference from single genome and/or metagenomic data☆39Aug 21, 2026Updated last month
- SARS-CoV-2 workflow for nanopore sequence data☆42Aug 13, 2026Updated last month
- finding conserved regions in highly diverse genomes☆16May 25, 2026Updated 4 months ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆57Mar 23, 2026Updated 6 months ago
- Consensus sequences for each Pango lineage☆24Jun 27, 2025Updated last year
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆61Mar 23, 2023Updated 3 years ago
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14May 12, 2024Updated 2 years ago
- Variant call verification☆19May 12, 2025Updated last year
- A Slack bot for LLM/ImageGen responses using an OpenAI API backend (LlamaCPP, Ollama, etc)☆14Sep 26, 2026Updated last week