goldman-gp-ebi / SWAMPyLinks
☆12Updated 8 months ago
Alternatives and similar repositories for SWAMPy
Users that are interested in SWAMPy are comparing it to the libraries listed below
Sorting:
- SC2 variant detection and composition pipeline☆17Updated last year
- VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data☆21Updated last month
- ☆36Updated last month
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆28Updated last month
- ☆19Updated 3 weeks ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆20Updated last year
- A SARS-CoV-2 Mutation Pattern Query Tool☆17Updated 2 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆38Updated last week
- Primer schemes for real-time genome epidemiology☆28Updated last year
- Split k-mer analysis – version 2☆86Updated 3 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 6 months ago
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆13Updated 2 months ago
- Gene-flank analysis tool☆27Updated 5 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated 3 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference☆29Updated this week
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 3 months ago
- Harmonization of AMR predictor tool outputs☆25Updated 4 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated last month
- ☆30Updated last year
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆27Updated last month
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆36Updated 6 months ago
- Recombination-free trees☆58Updated 2 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 11 months ago
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- A MinION-based pipeline for tracking species biodiversity☆13Updated last year
- Bifrost graph gene caller.☆95Updated 8 months ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated last month