rivasiker / autocoalhmm
Automated pipeline for running CoalHMM
☆12Updated last year
Alternatives and similar repositories for autocoalhmm:
Users that are interested in autocoalhmm are comparing it to the libraries listed below
- ☆20Updated 6 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Analyses of sex chromosome evolution in songbirds☆15Updated 5 years ago
- ☆21Updated last year
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆9Updated 2 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆34Updated last month
- ☆39Updated last year
- ☆12Updated 5 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 5 years ago
- ☆22Updated 2 years ago
- ☆29Updated 2 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 8 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆27Updated last month
- Plant genome assembly and annotation pipeline using snakemake☆40Updated last year
- Centromics: visualing centromeres with multiple omics data☆17Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆30Updated 5 months ago
- Genome Annotation Pipeline☆35Updated 6 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆28Updated last month
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 8 months ago
- ☆27Updated 3 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆30Updated 2 weeks ago
- ☆27Updated 2 years ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆21Updated this week
- ☆19Updated 2 years ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated 9 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- Pooled Sequencing Analysis for Sex Signal☆11Updated 3 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago