Alternatives and similar repositories for autocoalhmm

Users that are interested in autocoalhmm are comparing it to the libraries listed below

• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆37Updated 2 months ago
• ShiuLab / PseudogenePipeline
  ☆40Updated 2 years ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆22Updated last year
• Zhenlisme / heliano
  HELIANO is a software for detection and classification of Helitron-like elements.
  ☆30Updated 2 months ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆21Updated last year
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆34Updated 10 months ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆32Updated 7 months ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆37Updated 6 months ago
• baozg / phased-assembly-check
  ☆30Updated 7 months ago
• LQHHHHH / paml-yn00-run-pipeline
  A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method
  ☆10Updated 6 months ago
• JM-SONG / GenomeSyn
  ☆25Updated 3 years ago
• xjtu-omics / HiCAT
  HiCAT new project
  ☆28Updated 3 months ago
• sudmantlab / amylase_diversity_project
  ☆19Updated 8 months ago
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆42Updated 7 months ago
• Argonum-Clever2 / mike
  ☆31Updated 5 months ago
• liushoucheng / SPART
  a Semi-automated pipeline for assembling T2T genome
  ☆20Updated this week
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆36Updated last year
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• simon19891216 / CentIER
  ☆37Updated last month
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆37Updated 6 years ago
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆19Updated last year
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆24Updated 5 months ago
• Dee-chen / Tree2gd
  ☆41Updated 2 years ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆32Updated last year
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 2 years ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆46Updated 3 months ago
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆41Updated 2 years ago
• lurebgi / BOPsexChr
  Analyses of sex chromosome evolution in songbirds
  ☆16Updated 6 years ago