rivasiker / autocoalhmm
Automated pipeline for running CoalHMM
☆12Updated last year
Alternatives and similar repositories for autocoalhmm:
Users that are interested in autocoalhmm are comparing it to the libraries listed below
- ☆24Updated 3 years ago
- ☆20Updated 7 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- ☆39Updated last year
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- Plant genome assembly and annotation pipeline using snakemake☆42Updated last year
- ☆30Updated 2 weeks ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆28Updated 2 months ago
- ☆40Updated 2 years ago
- ☆29Updated 2 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 9 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆12Updated 5 years ago
- Analyses of sex chromosome evolution in songbirds☆15Updated 5 years ago
- Genome Annotation Pipeline☆35Updated 7 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆28Updated 2 months ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated 10 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated last month
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- ☆27Updated 3 years ago
- ☆22Updated last year
- Centromics: visualing centromeres with multiple omics data☆22Updated 3 weeks ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆9Updated last month
- A tool for quick and accurate calculation of syntenic diversity.☆36Updated 2 months ago
- Centromics: visualing centromeres with multiple omics data☆18Updated last year
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆23Updated 3 weeks ago
- ☆27Updated 2 years ago