Method used in the study on germline mutation rate estimation in 68 species of vertebrates.
☆17Oct 11, 2021Updated 4 years ago
Alternatives and similar repositories for vertebrate_rate
Users that are interested in vertebrate_rate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 7 months ago
- Automated pipeline for running CoalHMM☆13Jan 9, 2026Updated 7 months ago
- Evolutionary Sparse Learning - Paired Species Contrast☆17Jul 22, 2026Updated last month
- Portable solution to generate genome alignment chains using lastz☆69Aug 22, 2026Updated last week
- Probabilistic Inference of Molecular Evolution☆10Sep 6, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Yet another Hi-C scaffolding tool☆23Oct 23, 2024Updated last year
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- Scripts used for the ACT paper☆12May 6, 2021Updated 5 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆58Dec 10, 2025Updated 8 months ago
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 8 months ago
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- Fits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treat…☆15Aug 20, 2026Updated last week
- ☆16Jun 22, 2022Updated 4 years ago
- Convergent substitution detection tool based on the PCOC model☆32Dec 2, 2021Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated 5 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆71Aug 5, 2026Updated 3 weeks ago
- GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.☆25Sep 19, 2016Updated 9 years ago
- Process, visualize, and analyze phylogenetic trees☆13Updated this week
- Genomic signature interpretation tool for DNA double-strand break repair mechanism☆11Oct 8, 2025Updated 10 months ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆15May 29, 2024Updated 2 years ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- Daily usage script recording☆12Aug 20, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Visualising discordant reads☆16Sep 2, 2015Updated 10 years ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 3 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 6 months ago
- Small collection of random useful perl scripts☆21Jun 23, 2014Updated 12 years ago
- Generating UTRs from SHort Reads☆12Sep 28, 2020Updated 5 years ago
- Bio++ Phylogenetic Library☆18Updated this week
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Aug 25, 2020Updated 6 years ago
- Whole genome workflows☆13Nov 9, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Segmental duplication detection tool☆15Feb 7, 2023Updated 3 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- Tools for improving the sensitivity and specificity of genome alignments☆58Mar 12, 2026Updated 5 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆38May 11, 2026Updated 3 months ago
- Inferring natural selection by comparative population genomic analysis across species☆28Oct 31, 2023Updated 2 years ago
- A suite of methods and models for studying evolutionary radiations☆25Feb 22, 2023Updated 3 years ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 3 years ago