Alternatives and similar repositories for snapp_prep

Users that are interested in snapp_prep are comparing it to the libraries listed below

• esayyari / DiscoVista
  ☆42Updated 2 years ago
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆82Updated 10 months ago
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆27Updated last month
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆55Updated 3 years ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆32Updated last month
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆51Updated last year
• dportik / dadi_pipeline
  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…
  ☆67Updated last year
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆28Updated 5 years ago
• mgaynor1 / nQuack
  An R package for predicting ploidal level from sequence data using site-based heterozygosity 
  ☆17Updated last month
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆39Updated last year
• FePhyFoFum / SortaDate
  ☆18Updated 4 years ago
• simonhmartin / twisst2
  Topology weighting from unphased genotypes of any ploidy
  ☆17Updated 3 months ago
• gphocs-dev / G-PhoCS
  G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …
  ☆34Updated 4 years ago
• rtfcoimbra / Coimbra-et-al-2021_CurrBiol
  Code used to analyse WGS data of giraffe in Coimbra et al. 2021
  ☆12Updated 2 years ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆47Updated 3 months ago
• ForBioPhylogenomics / tutorials
  Tutorials on phylogenomic analyses for the ForBio Phylogenomics course
  ☆37Updated last year
• meganlsmith / delimitR
  This repository contains the code and manual for the R package delimitR.
  ☆17Updated 3 years ago
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆59Updated 3 weeks ago
• LarsNauheimer / HybPhaser
  Workflow to detect and phase hybrids in target capture data
  ☆20Updated 2 years ago
• BGAcademy23 / smudgeplot
  Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot
  ☆11Updated 2 years ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆46Updated 3 years ago
• Capblancq / RDA-landscape-genomics
  ☆32Updated 3 years ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆44Updated 6 years ago
• speciationgenomics / presentations
  Presentations from the course
  ☆38Updated 2 years ago
• clairemerot / angsd_pipeline
  ☆28Updated 2 years ago
• mossmatters / phyloscripts
  Helper scripts for processing and visualization of phylogenetics datasets
  ☆30Updated last year
• millanek / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆49Updated 6 months ago
• CoBiG2 / RAD_Tools
  A collection of usefull tools for RAD or GBS data analysis
  ☆33Updated 8 months ago
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆128Updated 4 months ago