Prepare XML input files for divergence-time estimation with SNAPP
☆21Dec 3, 2022Updated 3 years ago
Alternatives and similar repositories for snapp_prep
Users that are interested in snapp_prep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- command-line tools for the management of genotype likelihoods and allele counts☆30Feb 12, 2024Updated 2 years ago
- A collection of usefull tools for RAD or GBS data analysis☆33Mar 14, 2025Updated last year
- A pipeline creation tool using Snakemake☆13Apr 24, 2026Updated last month
- Accurate Species TRee ALgorithm☆279Apr 1, 2024Updated 2 years ago
- Utilities for analyzing next generation sequencing data.☆16May 7, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- Automated pipeline for running CoalHMM☆13Jan 9, 2026Updated 4 months ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- Snakemake module for the snpArcher pipeline for population size change inference.☆10Nov 12, 2024Updated last year
- Tutorials on phylogenetic and phylogenomic inference☆396Apr 12, 2026Updated last month
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Oct 12, 2024Updated last year
- Programs for performing various population genetic analyses☆12Apr 5, 2026Updated last month
- Species occurrence dot maps in R☆21Mar 22, 2022Updated 4 years ago
- R package for analysis of hybrids and hybrid zones☆21Dec 30, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)☆14Sep 19, 2017Updated 8 years ago
- A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".☆25May 3, 2026Updated 3 weeks ago
- Joint inference of heterozygosity rates and runs of homozygosity☆20Dec 12, 2025Updated 5 months ago
- package for interacting with the chromosome counts database (CCDB) at https://taux.evolseq.net/CCDB_web/☆13Jul 28, 2025Updated 9 months ago
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 5 years ago
- Hybridization detection using phylogenetic invariants☆51Oct 29, 2024Updated last year
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Oct 2, 2019Updated 6 years ago
- ☆16Jan 6, 2022Updated 4 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆49May 19, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆27Apr 14, 2021Updated 5 years ago
- Simple tool for capturing alignment regions with sufficient quality for genotyping.☆23Aug 20, 2021Updated 4 years ago
- A powerful Perl module for simulating the genome digestions by restriction enzymes☆14Sep 10, 2024Updated last year
- Recombination Landscape Estimation using Recurrent Neural Networks☆67Mar 27, 2026Updated last month
- ☆17Dec 2, 2015Updated 10 years ago
- SMC++ infers population history from whole-genome sequence data.☆176Jan 20, 2024Updated 2 years ago
- SNP genotyping in polyploids☆16Aug 12, 2020Updated 5 years ago
- A pipeline that accepts a VCF file to run through Admixture☆64May 3, 2026Updated 3 weeks ago
- MSMC2 Scripts☆28Sep 24, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆190Dec 19, 2024Updated last year
- ☆16Jun 14, 2017Updated 8 years ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆336Jul 7, 2023Updated 2 years ago
- Machuruku☆32Jan 20, 2025Updated last year
- Posterior summarisation in Bayesian phylogenetics☆71Sep 27, 2025Updated 7 months ago
- ☆46Sep 5, 2023Updated 2 years ago
- Population genetics analyses from NGS data☆27Mar 8, 2021Updated 5 years ago