pkalbers / geva
Genealogical Estimation of Variant Age (GEVA)
☆27Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for geva
- Likelihood-based Selective Sweep Detection☆35Updated last year
- Genome-wide scan for balancing selection using beta statistic☆27Updated last year
- Tools and Utilities for msmc and msmc2☆45Updated last year
- ☆18Updated 7 months ago
- ☆40Updated 6 months ago
- ☆24Updated 7 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆32Updated last year
- Haplotype and population structure inference using neural networks.☆26Updated 3 months ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- scripts for the project of seven thaliana genomes assembly☆37Updated 3 years ago
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- R-package: Calculation of haplotype blocks and libraries☆27Updated 7 months ago
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year
- Population genetics analyses from NGS data☆25Updated 3 years ago
- Tutorial on using popular tools for learning about population history☆49Updated 6 years ago
- read and analyse RepeatMasker output☆23Updated last year
- ☆49Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆38Updated 4 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format☆27Updated last month
- Pan-genome Construction and Population Structure Variation Calling pipeline☆33Updated last month
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- General purpose population genetics software☆12Updated 5 years ago
- Computational Analysis of Gene Expression Evolution☆36Updated last week
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- ☆28Updated 2 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆24Updated 6 years ago
- A haplotype analysis toolkit for natural variation study.☆27Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆19Updated 4 years ago
- ☆24Updated 2 years ago
- ☆31Updated 4 years ago