Genealogical Estimation of Variant Age (GEVA)
☆34Sep 30, 2021Updated 5 years ago
Alternatives and similar repositories for geva
Users that are interested in geva are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package to estimate the timing of selection for a beneficial allele.☆14Dec 2, 2021Updated 4 years ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆14May 1, 2019Updated 7 years ago
- ☆10Jan 20, 2026Updated 9 months ago
- predicting DFE and alpha from polymorphism data☆29Oct 4, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast and flexible inference of the distribution of fitness effects (DFE).☆16Oct 21, 2026Updated last week
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆40Oct 12, 2026Updated 2 weeks ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆28Jul 8, 2022Updated 4 years ago
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Feb 15, 2020Updated 6 years ago
- Tools and Utilities for msmc and msmc2☆51Jan 23, 2026Updated 9 months ago
- A framework for simulation-based inference in evolutionary biology☆28Jan 13, 2026Updated 9 months ago
- ☆49Oct 17, 2025Updated last year
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆60Jun 12, 2025Updated last year
- A tool for pangenome graph-based phased diploid genome inference.☆10Sep 19, 2026Updated last month
- A software package for local ancestry inference and haplotype phasing☆46Apr 20, 2023Updated 3 years ago
- ARG-based inference of selection using deep learning☆18Aug 31, 2023Updated 3 years ago
- Automated pipeline for running CoalHMM☆13Jan 9, 2026Updated 9 months ago
- ☆12May 13, 2024Updated 2 years ago
- ☆32Oct 7, 2026Updated 3 weeks ago
- ☆21Dec 13, 2024Updated last year
- Time-stratified f-statistics☆19Aug 1, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Sampling and inference of genealogies with recombination☆68Aug 21, 2026Updated 2 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆193Dec 19, 2024Updated last year
- Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.☆20Oct 25, 2020Updated 6 years ago
- Haplotype based scans for selection☆151Jun 5, 2026Updated 4 months ago
- Methods for examining PCA locally along the genome.☆91Aug 13, 2024Updated 2 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 3 years ago
- Software package for estimating fine-scale recombination rate.☆19Jun 8, 2021Updated 5 years ago
- Population-scale genotyping using pangenome graphs☆203Jan 9, 2025Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆41Oct 17, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Build phylogenomic datasets in seconds☆15Updated this week
- A Forward Simulation Framework for Studying the Role of Transposable Elements in Genome Expansion and Contraction☆11Sep 29, 2026Updated last month
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆22Apr 9, 2025Updated last year
- Infering ancestral synteny with hierarchical orthologous groups☆40Updated this week
- LASSI-Plus: A program to calculate haplotype frequency spectrum statistics☆13Sep 29, 2026Updated last month
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated last year
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago