Alternatives and similar repositories for fastDFE

Users that are interested in fastDFE are comparing it to the libraries listed below

• harris-2374 / THEx
  Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.
  ☆14Updated last year
• jesvedberg / Ancestry_HMM-S
  Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data
  ☆17Updated last year
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated 3 weeks ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆23Updated last year
• SwallowGenomics / BarnSwallow
  ☆12Updated 2 years ago
• VIB-PSB / ksrates
  ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…
  ☆19Updated 2 weeks ago
• davidebolo1993 / cosigt
  ☆19Updated last week
• rpianezza / GenomeDelta
  Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…
  ☆17Updated 6 months ago
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆20Updated 8 months ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆30Updated 2 years ago
• tangerzhang / calc_switchErr
  ☆27Updated 2 months ago
• cchauve / ANGeS
  Reconstruction of ancestral genome maps
  ☆16Updated 7 years ago
• linguoliang / puzzle-hi-c
  ☆16Updated 5 months ago
• kr-colab / FILET
  Software for detecting introgression using supervised machine learning
  ☆21Updated 2 years ago
• c-zhou / polyGembler
  ☆16Updated 2 years ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆31Updated 10 months ago
• owensgl / reformat
  Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format
  ☆13Updated 3 months ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆17Updated last year
• ChenHuaLab / Beta-PSMC
  ☆12Updated 5 years ago
• ChenHuaLab / HaploSweep
  HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.
  ☆10Updated 8 months ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆23Updated 3 years ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆30Updated 4 months ago
• sudmantlab / amylase_diversity_project
  ☆16Updated 5 months ago
• malthesr / winsfs
  Site frequency spectrum estimation based on window expectation-maximisation algorithm
  ☆13Updated 2 years ago
• GLBRC / sppIDer
  a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
  ☆19Updated 5 years ago
• LohseLab / gIMble
  A genome-wide IM blockwise likelihood estimation toolkit
  ☆16Updated 11 months ago
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆13Updated last year
• avaughn271 / CLUES2
  The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.
  ☆11Updated last month
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆23Updated last year