Sendrowski / fastDFE
Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annotation.
☆11Updated last week
Related projects ⓘ
Alternatives and complementary repositories for fastDFE
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆9Updated last month
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆15Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆12Updated 3 months ago
- Domain based annotation of transposable elements☆19Updated last month
- ☆15Updated 2 years ago
- Software package for estimating fine-scale recombination rate.☆13Updated 3 years ago
- Inferring natural selection by comparative population genomic analysis across species☆21Updated last year
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 5 years ago
- ☆24Updated 3 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆12Updated 9 months ago
- ☆18Updated 2 years ago
- Reconstruction of ancestral genome maps☆16Updated 6 years ago
- Centromics: visualing centromeres with multiple omics data☆22Updated 2 weeks ago
- ☆12Updated 5 years ago
- ☆20Updated 3 months ago
- Centromics: visualing centromeres with multiple omics data☆17Updated 10 months ago
- Construct and Analyze the North American Vitis pangenome☆21Updated 11 months ago
- ☆20Updated 8 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- Software for detecting introgression using supervised machine learning☆18Updated 2 years ago
- Selection outlier scan with population branch statistic☆13Updated 9 months ago
- A genome assembly assessment pipeline.☆36Updated last year
- Toolkit for evolutionary analyses of linkage groups☆23Updated 4 months ago
- ☆26Updated 6 months ago
- ☆28Updated 2 months ago
- Genome alignment and synteny plots☆27Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆23Updated 8 months ago
- A Hi-C scaffolding method☆22Updated 2 years ago
- A genome-wide IM blockwise likelihood estimation toolkit☆15Updated 4 months ago
- ☆36Updated last year