Sendrowski / fastDFE
Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annotation.
☆16Updated 3 weeks ago
Alternatives and similar repositories for fastDFE:
Users that are interested in fastDFE are comparing it to the libraries listed below
- Domain based annotation of transposable elements☆19Updated 2 months ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆16Updated last year
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆9Updated 7 months ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- A genome-wide IM blockwise likelihood estimation toolkit☆16Updated 10 months ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 9 months ago
- ☆17Updated 2 weeks ago
- Software for detecting introgression using supervised machine learning☆20Updated 2 years ago
- Automated pipeline for running CoalHMM☆13Updated last year
- A Hi-C scaffolding method☆23Updated 3 years ago
- Software package for estimating fine-scale recombination rate.☆14Updated 3 years ago
- Genome alignment and synteny plots☆30Updated last year
- ☆12Updated 2 years ago
- ☆27Updated 2 weeks ago
- ☆16Updated 2 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆19Updated 2 weeks ago
- ☆23Updated 8 months ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆11Updated 2 weeks ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 2 months ago
- FastK based version of Merqury☆24Updated last week
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆13Updated last year
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 6 months ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 4 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆17Updated this week
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- The MafFilter genome alignment processor☆18Updated 3 weeks ago
- ☆16Updated 4 months ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆18Updated 5 years ago