Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annotation.
☆18Mar 21, 2026Updated 2 weeks ago
Alternatives and similar repositories for fastDFE
Users that are interested in fastDFE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412☆12Aug 24, 2025Updated 7 months ago
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 2 years ago
- An R package to estimate the timing of selection for a beneficial allele.☆14Dec 2, 2021Updated 4 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆18Apr 9, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆37Oct 29, 2025Updated 5 months ago
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 8 months ago
- Sampling and inference of genealogies with recombination☆55Mar 20, 2026Updated 3 weeks ago
- ☆56Jun 12, 2025Updated 9 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Oct 1, 2025Updated 6 months ago
- Inferring natural selection by comparative population genomic analysis across species☆26Oct 31, 2023Updated 2 years ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- ☆21Dec 13, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 3 months ago
- Differential k-mer analysis☆40Jan 29, 2024Updated 2 years ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated last year
- Genealogical Estimation of Variant Age (GEVA)☆32Sep 30, 2021Updated 4 years ago
- ☆24Mar 15, 2026Updated 3 weeks ago
- command-line tools for the management of genotype likelihoods and allele counts☆30Feb 12, 2024Updated 2 years ago
- ☆13Dec 3, 2024Updated last year
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 8 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Reference bias measuring toolkit☆20Mar 12, 2026Updated 3 weeks ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- Consensus genome annotation using OMA☆31Jan 14, 2026Updated 2 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆58Aug 9, 2015Updated 10 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆36Oct 27, 2025Updated 5 months ago
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆15Sep 5, 2024Updated last year
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Mar 19, 2026Updated 3 weeks ago
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- use variant nesting information to flter overlapping sites from vg deconstruct output☆32Jun 12, 2025Updated 9 months ago
- Automated pipeline for running CoalHMM☆13Jan 9, 2026Updated 3 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆48Oct 22, 2024Updated last year
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Topology weighting from unphased genotypes of any ploidy☆23Mar 19, 2026Updated 3 weeks ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year