Integrating long read sequencing enhances short read-based locus-specific transposable element quantification
☆12May 12, 2025Updated last year
Alternatives and similar repositories for LocusMasterTE
Users that are interested in LocusMasterTE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 3 years ago
- pipeline for working with PacBio long read RNA data using the outputs of isoseq3☆10Updated this week
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆25Sep 5, 2024Updated 2 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆38Apr 17, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The Isoforms from Single-Cell; Long-read Expression Suite☆43Jan 14, 2025Updated last year
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated last year
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq at locus- or subfamily-level☆27Aug 25, 2026Updated 2 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- ☆68Mar 19, 2026Updated 7 months ago
- Software for Quantifying Interspersed Repeat Expression☆69Jun 20, 2022Updated 4 years ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago
- ☆10Nov 20, 2025Updated 11 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tool comparison for detecting differentially expressed individual transposable elements☆12Jan 7, 2022Updated 4 years ago
- TEspeX - pipeline for Transposable Elements expression quantification☆21Aug 24, 2023Updated 3 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Mar 3, 2026Updated 7 months ago
- Quantification of transposable element expression using RNA-seq☆98Feb 8, 2024Updated 2 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- ☆15Apr 26, 2023Updated 3 years ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆15Apr 28, 2026Updated 6 months ago
- ☆15Jun 29, 2021Updated 5 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A Cloud Pipeline to Analyze Long Read Sequencing Data from Oxford Nanopore and PacBio Sequencers☆12Jan 30, 2023Updated 3 years ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 4 months ago
- TR annotation tool VAMPIRE☆19Sep 2, 2026Updated 2 months ago
- long read RNA-seq quantification☆127Oct 24, 2026Updated last week
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆17Apr 4, 2024Updated 2 years ago
- Long-read splice alignment with high accuracy☆64Oct 8, 2026Updated 3 weeks ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆20Updated this week
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 6 months ago
- ANI based satellite annotation☆31Aug 6, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆73Jan 31, 2024Updated 2 years ago
- UCASpatial: Ultra-precision deconvolution of spatial transcriptomics data☆12Sep 8, 2026Updated last month
- Long read to rMATS☆32May 5, 2023Updated 3 years ago
- ☆31Nov 28, 2024Updated last year
- ☆10Oct 16, 2026Updated 2 weeks ago
- A comprehensive toolkit for quality control and analysis of single-cell long-read RNA-seq data☆10Jun 3, 2026Updated 4 months ago
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated last year