Extremely fast and accurate Nanopore demultiplexing
☆106Sep 5, 2026Updated 2 weeks ago
Alternatives and similar repositories for barbell
Users that are interested in barbell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast approximate string searching☆169Aug 11, 2026Updated last month
- A new high-resolution long-read metagenome assembler for even noisy reads☆171Sep 9, 2026Updated 2 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆239Sep 17, 2026Updated last week
- Fast DNA search and [host] depletion using minimizers☆127Updated this week
- An extensible and performant aligner and read mapper☆105Sep 15, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads☆58Aug 31, 2026Updated 3 weeks ago
- A rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele caller.☆33Aug 19, 2026Updated last month
- Tearing through FASTA/Q sequences☆39Jul 9, 2026Updated 2 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆238Sep 11, 2026Updated last week
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆48Updated this week
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆231May 9, 2026Updated 4 months ago
- Graph-based assembly phasing☆102Nov 25, 2025Updated 9 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆50Updated this week
- lossless nanopore pod5 <=> s/blow5 file conversion☆50Aug 26, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- sunburst plots for taxonomy - working to update Krona☆48Sep 22, 2025Updated last year
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Aug 19, 2026Updated last month
- Single-cache-miss rank queries over size 2 and 4 alphabets. 2x faster than all other Rust crates.☆18Apr 1, 2026Updated 5 months ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆227Sep 15, 2026Updated last week
- Parallel Construction of Suffix Arrays in Rust☆26Updated this week
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 6 months ago
- an API for intersections of genomic data☆149Sep 17, 2026Updated last week
- Successor of bwa-mem for short-read alignment☆350Aug 13, 2026Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆323Sep 15, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Rust bindings to minimap2 library☆113Sep 14, 2026Updated last week
- A SIMD-accelerated library to compute random minimizers☆48Aug 26, 2026Updated 3 weeks ago
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- Ultra-rapid detection of viral variants directly from sequencing data☆47Sep 16, 2026Updated last week
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆30Jul 26, 2026Updated last month
- Fast and exact gap-affine partial order alignment☆71Sep 16, 2026Updated last week
- Visualise and analyse nanopore (ONT) raw signals☆130Jun 11, 2026Updated 3 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆34Aug 26, 2024Updated 2 years ago
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fast sequence distance estimates☆34Aug 24, 2026Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.☆72Apr 10, 2025Updated last year
- ☆262Sep 13, 2026Updated last week
- Genome browser 🧬👀🚀☆35Aug 24, 2026Updated last month
- A repository for collecting GPU basecalling stats☆93May 11, 2026Updated 4 months ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆54Jun 22, 2026Updated 3 months ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 4 months ago