Extremely fast and accurate Nanopore demultiplexing
☆90Apr 9, 2026Updated 3 weeks ago
Alternatives and similar repositories for barbell
Users that are interested in barbell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Efficient, parallel compression for terabyte-scale data☆62Feb 25, 2026Updated 2 months ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Fast DNA search and [host] depletion using minimizers☆110Apr 14, 2026Updated 3 weeks ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆146Apr 5, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Graph-based assembly phasing☆94Nov 25, 2025Updated 5 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Apr 23, 2026Updated last week
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆213Mar 3, 2026Updated 2 months ago
- Fast and space-efficient taxonomic classification of long reads☆45Aug 25, 2025Updated 8 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆228Sep 6, 2025Updated 7 months ago
- A repository for collecting GPU basecalling stats☆89Feb 10, 2026Updated 2 months ago
- Extract methylation calls from long reads (ONT/ PacBio)☆24Apr 28, 2026Updated last week
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 8 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rapid & standardized genome annotation using protein structural information☆63Updated this week
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 7 months ago
- A long read simulator based on badread idea☆23Oct 7, 2022Updated 3 years ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆89Apr 24, 2026Updated last week
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Aug 26, 2024Updated last year
- Plasmid analysis using rearrangement distances☆53Updated this week
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated last year
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- Parallel Construction of Suffix Arrays in Rust☆26May 2, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 6 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆131Jan 22, 2025Updated last year
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆36Jul 21, 2025Updated 9 months ago
- ☆13Dec 3, 2024Updated last year
- ☆49Mar 19, 2023Updated 3 years ago
- Genome size estimation from long read overlaps☆86Updated this week
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆39Apr 28, 2026Updated last week
- Fast approximate string searching☆123Apr 11, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Apr 27, 2026Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆229Apr 27, 2026Updated last week
- Randomly subsample sequencing reads or alignments☆261Apr 28, 2026Updated last week
- Correcting errors in noisy long reads using variation graphs☆51Nov 17, 2022Updated 3 years ago
- Simple-to-use interactive comparison of two bacterial genomes☆28Jan 30, 2026Updated 3 months ago
- ☆12May 6, 2021Updated 4 years ago