mbhall88 / drprgLinks
Drug Resistance Prediction with Reference Graphs
☆21Updated 2 years ago
Alternatives and similar repositories for drprg
Users that are interested in drprg are comparing it to the libraries listed below
Sorting:
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Updated last year
- Remove human reads from a sequencing run☆40Updated 2 months ago
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆30Updated 2 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆26Updated last month
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆32Updated last month
- software to identify primers that can distinguish genomes☆20Updated 8 months ago
- Genome size estimation from long read overlaps☆61Updated 2 weeks ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆24Updated this week
- sunburst plots for taxonomy - working to update Krona☆40Updated 2 weeks ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆29Updated last year
- A new high-resolution long-read metagenome assembler for even noisy reads☆99Updated 3 weeks ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆43Updated 2 years ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆43Updated last month
- Recombination-free trees☆60Updated last month
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆43Updated 6 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 8 months ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Updated last month
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆37Updated last year
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 4 months ago
- ☆24Updated 8 months ago
- ☆12Updated 10 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…☆10Updated last month
- Find Unique genomic Regions☆30Updated 3 weeks ago