Drug Resistance Prediction with Reference Graphs
☆21Oct 23, 2025Updated last year
Alternatives and similar repositories for drprg
Users that are interested in drprg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools to explore Minimum Decycling Sets (MDSs) of the de Bruijn graph☆12Sep 11, 2025Updated last year
- Mycobacterium tuberculosis complex lineage typing☆11Jun 22, 2025Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 3 months ago
- Mycobacterial pipeline☆11Sep 11, 2025Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆32Jul 27, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆11Apr 24, 2023Updated 3 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- ☆16Jun 30, 2021Updated 5 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- Compressed, associative, and exact hash table for k-mers☆11Oct 15, 2026Updated 2 weeks ago
- A Python package for working with Bactopia☆12Aug 5, 2026Updated 2 months ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- A easy-to-use Python API for Primer3 primer design.☆17Nov 10, 2022Updated 3 years ago
- Iterate over minimizers of a DNA sequence☆34Jul 12, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Profiling NTM WGS data☆19Oct 24, 2026Updated last week
- NCBI Taxonomy History Browser☆10May 7, 2026Updated 5 months ago
- Local alignment search with k-bounded matching statistics.☆24Oct 12, 2026Updated 3 weeks ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆114Oct 12, 2026Updated 3 weeks ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆32Jan 31, 2026Updated 9 months ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 3 years ago
- SuperSampler, an efficient scaled size sketching and sketch comparison tool☆11Nov 13, 2023Updated 2 years ago
- Implementations of syncmer-based long read mappers☆10Mar 8, 2024Updated 2 years ago
- Pan-genome inference and genotyping with long noisy or short accurate reads☆121Dec 13, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆18Oct 12, 2026Updated 3 weeks ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated 5 months ago
- TAXnomic Profile Aggregation and STAndardisation☆43May 2, 2026Updated 6 months ago
- Fasten toolkit, for streaming operations on fastq files☆84Oct 12, 2026Updated 3 weeks ago
- Phylotype your strains using Clermont's 2013 method: ezclermont.org☆18May 5, 2026Updated 5 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Updated this week
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Split k-mer analysis – version 2☆109Oct 20, 2026Updated 2 weeks ago
- 2bit file format implementation in Rust☆16Mar 27, 2026Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 4 months ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 6 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 4 months ago
- Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data☆143Oct 25, 2026Updated last week
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆26Jul 10, 2026Updated 3 months ago
- Implementation of the u-index☆12Jul 19, 2025Updated last year
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆49Sep 18, 2026Updated last month