noamteyssier / sgcountLinks
A flexible and fast sgRNA counter from FASTQ Files
☆10Updated 3 weeks ago
Alternatives and similar repositories for sgcount
Users that are interested in sgcount are comparing it to the libraries listed below
Sorting:
- ☆20Updated 7 months ago
- ☆16Updated last year
- Transposable element databases☆14Updated 3 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago
- Blazing fast toolkit to work with .hic and .cool files☆42Updated last week
- A toolkit for analyzing architectural stripes☆20Updated last year
- simplified cellranger for long-read data☆19Updated 4 months ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Updated 3 months ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated 2 weeks ago
- ☆14Updated 7 months ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 7 months ago
- Suite of analysis tools for spatial total RNA-sequencing☆12Updated 2 years ago
- scover☆24Updated 2 years ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆37Updated last year
- isoCirc☆10Updated 2 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Updated 2 years ago
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆15Updated 8 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- ☆17Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Updated last year
- A pipeline for scRNA analysis under HPC☆10Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Updated 4 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 3 months ago
- Explore the Hi-Cs☆11Updated last month
- Analyse RNA feature distributions.☆18Updated last year