A flexible and fast sgRNA counter from FASTQ Files
☆11Dec 29, 2025Updated 3 months ago
Alternatives and similar repositories for sgcount
Users that are interested in sgcount are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tutorials for the crisprVerse☆14Feb 10, 2025Updated last year
- MEA-ToolBox is a standalone application that allows users to analyze voltage data recorded from multielectrode arrays.☆20Nov 9, 2022Updated 3 years ago
- Factorize-Recover for Perturb-seq analysis (FR-Perturb)☆25Nov 4, 2025Updated 5 months ago
- pseudobulking on an AnnData object☆35Mar 14, 2025Updated last year
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- NEFF Calculator and MSA File Converter☆13Sep 16, 2025Updated 6 months ago
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 10 months ago
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- Analysis code and results for dreamlet☆11Jul 18, 2025Updated 8 months ago
- ☆38Sep 5, 2024Updated last year
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- ProTiler method for the analysis and visualization of CRISPR screens with tiling-sgRNA design☆14Feb 28, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Jupyter Notebook extension that adds collapsable cells.☆10Jun 21, 2020Updated 5 years ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 8 months ago
- Just another minhash implementation.☆12Mar 12, 2026Updated last month
- Efficient querying of biological databases☆44Oct 27, 2025Updated 5 months ago
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated last year
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 7 months ago
- ☆19May 10, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆20May 24, 2025Updated 10 months ago
- Single-cell analysis methods in Rust☆33Nov 4, 2025Updated 5 months ago
- bioinformatics toolkit in rust☆103Feb 15, 2026Updated last month
- ☆20Jul 22, 2024Updated last year
- AlfaPang builds pangenome graphs without alignments or references.☆15Nov 7, 2025Updated 5 months ago
- Convert bioinformatics files to an emoji format.☆24Jul 15, 2023Updated 2 years ago
- Convert genbank files to a swath of other formats☆30Mar 3, 2026Updated last month
- Package to Score Sequences using Rule Set 3☆15Nov 10, 2025Updated 5 months ago
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆15Apr 19, 2018Updated 7 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆23Mar 28, 2026Updated 2 weeks ago
- A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets☆20Feb 16, 2026Updated last month
- Genomic interval machine learning☆22Mar 11, 2026Updated last month
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Jun 4, 2019Updated 6 years ago
- ☆10Jan 19, 2019Updated 7 years ago