natir / rustyread
A long read simulator based on badread idea
☆20Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for rustyread
- Iterate over minimizers of a DNA sequence☆26Updated 4 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 7 months ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Remove human reads from a sequencing run☆24Updated last month
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 2 years ago
- k-mers and the like☆15Updated this week
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆41Updated 4 months ago
- Universal K-mer Hitting Set library in Rust☆10Updated 4 years ago
- Differential k-mer analysis☆33Updated 9 months ago
- ☆17Updated last year
- Filter of Pairwise Alignement☆44Updated 2 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆16Updated this week
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆34Updated 9 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated last week
- ☆45Updated 3 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆27Updated 2 months ago
- ☆32Updated last year
- Rust wrapper for the next generation (still currently in C++)☆20Updated this week
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated 7 months ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 2 weeks ago
- Drug Resistance Prediction with Reference Graphs☆19Updated last year
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- ☆14Updated 4 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆22Updated 2 weeks ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆23Updated last month
- ☆16Updated 3 years ago