Alternatives and similar repositories for rustyread

Users that are interested in rustyread are comparing it to the libraries listed below

• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 4 years ago
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆34Updated 3 years ago
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆34Updated 5 years ago
• mbhall88 / pafpy
  A lightweight library for working with PAF (Pairwise mApping Format) files
  ☆30Updated 3 years ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 4 years ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated 4 months ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆32Updated 4 years ago
• esteinig / sketchy
  Genomic neighbor typing of bacterial pathogens using MinHash
  ☆42Updated 3 years ago
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆24Updated last month
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆32Updated 6 months ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆37Updated 8 months ago
• VGP / vgp-tools
  ☆28Updated 9 months ago
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆28Updated 9 months ago
• sourmash-bio / sourmash_plugin_branchwater
  fast, multithreaded sourmash operations: search, compare, and gather.
  ☆25Updated this week
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 5 years ago
• lh3 / pubLRasm
  ☆17Updated 5 years ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆58Updated this week
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆40Updated 4 months ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆27Updated 2 weeks ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆39Updated 2 years ago
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆25Updated 2 years ago
• pierrepeterlongo / back_to_sequences
  ☆46Updated 2 months ago
• mbhall88 / nohuman
  Remove human reads from a sequencing run
  ☆47Updated last month
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 9 months ago
• mikolmogorov / pbclip
  A simple tool to fix PacBio fasta/q that was not properly split into subreads
  ☆16Updated 4 years ago
• karel-brinda / Phylign
  Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
  ☆39Updated last year
• tongzhouxu / mashpit
  Sketch-based surveillance platform
  ☆13Updated last year
• nluhmann / BlastFrost
  ☆44Updated 4 years ago