A long read simulator based on badread idea
☆23Oct 7, 2022Updated 4 years ago
Alternatives and similar repositories for rustyread
Users that are interested in rustyread are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆10Dec 21, 2022Updated 3 years ago
- Real-time species-typing visualisation for nanopore data.☆12Apr 11, 2023Updated 3 years ago
- ☆14Oct 14, 2020Updated 6 years ago
- Rust bindings to minimap2 library☆114Sep 14, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆39Oct 22, 2026Updated last week
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31May 25, 2026Updated 5 months ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- FASTA and FASTQ parsing in Rust☆84Mar 14, 2025Updated last year
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Basecalling configuration prediction from FASTQ files☆34Mar 17, 2026Updated 7 months ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆13Apr 16, 2019Updated 7 years ago
- ☆17Jan 5, 2021Updated 5 years ago
- FASTR, an efficient file format designed for lossless storage of sequencing data as numerical formats. Read more: https://www.biorxiv.org…☆12Oct 5, 2026Updated 3 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Updated this week
- a long read simulator that can imitate many types of read problems☆308Jul 24, 2026Updated 3 months ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 7 months ago
- ☆11Feb 16, 2023Updated 3 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Nov 25, 2017Updated 8 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆31Sep 12, 2023Updated 3 years ago
- ☆14Sep 11, 2023Updated 3 years ago
- ONT-first assembly pipeline☆13Jul 15, 2025Updated last year
- ☆16May 21, 2026Updated 5 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 6 years ago
- Correcting errors in noisy long reads using variation graphs☆53Nov 17, 2022Updated 3 years ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Feb 17, 2026Updated 8 months ago
- A tool for managing your pores☆10Jul 22, 2026Updated 3 months ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆109Updated this week
- Very fast ONT basecaller☆52Jun 17, 2022Updated 4 years ago
- Rust in bioinformatics and computational biology☆17Oct 22, 2022Updated 4 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 4 years ago
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆181Sep 19, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Simple succinct data structures (in Rust)☆56Sep 14, 2026Updated last month
- ☆10Jun 9, 2025Updated last year
- 🐦 spideog - Command line utility for Kraken2 reports.☆11Nov 30, 2020Updated 5 years ago
- Flip-flop basecaller for Oxford Nanopore reads☆97Jan 13, 2022Updated 4 years ago
- Proteins as words, genomes as documents.☆19Nov 11, 2020Updated 5 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Aligns short reads using dynamic seed size with strobemers☆211Updated this week