natir / rustyread
A long read simulator based on badread idea
☆20Updated 2 years ago
Alternatives and similar repositories for rustyread:
Users that are interested in rustyread are comparing it to the libraries listed below
- Iterate over minimizers of a DNA sequence☆27Updated 7 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆23Updated 10 months ago
- Sketch-based surveillance platform☆13Updated 2 months ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 3 months ago
- ☆17Updated 4 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆19Updated 3 months ago
- k-mers and the like☆21Updated this week
- Remove human reads from a sequencing run☆36Updated 4 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated this week
- A k-mer search engine for all Sequence Read Archive public accessions☆20Updated 3 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆27Updated 10 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 2 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 4 months ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 3 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆21Updated this week
- software to identify primers that can distinguish genomes☆21Updated 3 weeks ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆24Updated 5 months ago
- GFA insert into GenomicSQLite☆48Updated 3 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated 10 months ago
- ☆28Updated last year
- ☆15Updated 4 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- Genome size estimation from long read overlaps☆48Updated 2 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated 3 weeks ago
- Generate random test data for bioinformatics☆25Updated 8 months ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year