xinehc / melonLinks
Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
☆35Updated 8 months ago
Alternatives and similar repositories for melon
Users that are interested in melon are comparing it to the libraries listed below
Sorting:
- Bacterial GWAS analysis☆46Updated this week
- Calculate assocations between genes and traits☆29Updated 10 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Discover and annotate the virome☆58Updated 3 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- Microbial agile accurate SNP Typer☆30Updated 2 years ago
- Recombination-free trees☆63Updated 4 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 7 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated 2 weeks ago
- IslandPath standalone software☆35Updated 2 years ago
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- MAGScoT - a MAG scoring and refinement tool☆42Updated last year
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 5 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated 2 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- Gene Absence Presence Identification tool.☆27Updated 9 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Updated last year
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Updated 5 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated 3 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Updated 2 years ago