Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
☆36Jun 4, 2026Updated 3 weeks ago
Alternatives and similar repositories for melon
Users that are interested in melon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 2 months ago
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated last month
- Graph-based assembly phasing☆97Nov 25, 2025Updated 7 months ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 6 months ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆35Oct 17, 2023Updated 2 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆56Oct 24, 2025Updated 8 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆312Feb 3, 2026Updated 4 months ago
- snakemake-powered cli to download genomes using NCBI datasets☆15Aug 14, 2025Updated 10 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆27Feb 6, 2023Updated 3 years ago
- A comprehensive prokaryotic genome annotation pipeline☆88Jun 3, 2026Updated 3 weeks ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆65Jan 22, 2026Updated 5 months ago
- ☆11Nov 24, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Fast and space-efficient taxonomic classification of long reads☆45Aug 25, 2025Updated 10 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆109Updated this week
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆75Jun 24, 2026Updated last week
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Jun 23, 2026Updated last week
- Bacterial GWAS analysis☆56Jun 12, 2026Updated 2 weeks ago
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 5 months ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆28Jan 31, 2026Updated 5 months ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆179Apr 22, 2026Updated 2 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆34Updated this week
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- Organism-specific interpretation of AMR genotypes☆19Mar 17, 2026Updated 3 months ago
- whole genome MLST analysis☆53Jun 17, 2026Updated 2 weeks ago
- ☆10Jun 9, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jun 16, 2026Updated 2 weeks ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆151Jun 24, 2026Updated last week
- Genome size estimation from long read overlaps☆92Jun 22, 2026Updated last week
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆18Apr 4, 2026Updated 2 months ago
- Population analysis PIPEline 🛠🧬☆24Mar 2, 2026Updated 3 months ago