xinehc / melonLinks
Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
☆35Updated 6 months ago
Alternatives and similar repositories for melon
Users that are interested in melon are comparing it to the libraries listed below
Sorting:
- Bacterial GWAS analysis☆46Updated 3 weeks ago
- Calculate assocations between genes and traits☆29Updated 8 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 months ago
- MAGScoT - a MAG scoring and refinement tool☆37Updated last year
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆41Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆67Updated this week
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- Discover and annotate the virome☆53Updated last month
- Microbial agile accurate SNP Typer☆29Updated last year
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆42Updated last month
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated this week
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆56Updated this week
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 4 months ago
- ☆20Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 3 months ago
- ☆24Updated 9 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆37Updated 2 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆39Updated 3 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year