A repository for collecting GPU basecalling stats
☆94May 11, 2026Updated 5 months ago
Alternatives and similar repositories for 2025-Crowdsource-GPU-basecalling-stats
Users that are interested in 2025-Crowdsource-GPU-basecalling-stats are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Jan 9, 2025Updated last year
- Amplicon sequencing variants and taxonomic profiling from modern nanopore / HiFi long read amplicons.☆70Oct 10, 2026Updated 2 weeks ago
- Workflow for whole genome sequencing based phylogeny of Illumina and ONT R9/R10 data.☆11Oct 7, 2026Updated 3 weeks ago
- Extremely fast and accurate Nanopore demultiplexing☆106Sep 5, 2026Updated last month
- Oxford Nanopore's Basecaller☆883Sep 3, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.☆114May 10, 2024Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆246Oct 8, 2026Updated 3 weeks ago
- Basecalling configuration prediction from FASTQ files☆34Mar 17, 2026Updated 7 months ago
- Genome browser 🧬👀🚀☆35Aug 24, 2026Updated 2 months ago
- ☆39Oct 22, 2026Updated last week
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆36Oct 6, 2026Updated 3 weeks ago
- Remove lambda phage reads from a fastq file☆29Jan 16, 2023Updated 3 years ago
- Simple-to-use interactive comparison of two bacterial genomes☆28Jan 30, 2026Updated 9 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Oct 18, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆67Jun 16, 2025Updated last year
- GPU CRF-CTC decoding for nanopore basecalling☆16Oct 17, 2026Updated 2 weeks ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆51Updated this week
- A high-resolution long-read metagenome assembler for even noisy reads. Myloasm assembles strain-resolved, circular + complete genomes fro…☆176Oct 11, 2026Updated 2 weeks ago
- ☆85Jan 6, 2025Updated last year
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆239May 9, 2026Updated 5 months ago
- Visualise and analyse nanopore (ONT) raw signals☆130Jun 11, 2026Updated 4 months ago
- Exact, SIMD-accelerated sequence alignment (Smith-Waterman, Needleman-Wunsch, semi-global, overlap)☆12Aug 10, 2026Updated 2 months ago
- Efficient, parallel compression for terabyte-scale data☆64Feb 25, 2026Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆101Apr 5, 2026Updated 6 months ago
- A rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele caller.☆34Oct 14, 2026Updated 2 weeks ago
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 4 years ago
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 4 months ago
- Phylotype your strains using Clermont's 2013 method: ezclermont.org☆18May 5, 2026Updated 5 months ago
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated 3 months ago
- a quality control tool for bacterial ONT-only assemblies☆18Oct 19, 2026Updated last week
- A newly designed version of Bamsnap with Long Read Support (LRS) which inspired by bamsnap (https://github.com/parklab/bamsnap)☆14Oct 13, 2026Updated 2 weeks ago
- Evaluating Nanopore-based bacterial variant calling☆23Oct 7, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Successor of bwa-mem for short-read alignment☆359Updated this week
- ☆29Aug 15, 2026Updated 2 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆954Apr 3, 2026Updated 6 months ago
- Benchmark and toy datasets☆12Jan 8, 2025Updated last year
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated 2 years ago
- A Python package for working with Bactopia☆12Aug 5, 2026Updated 2 months ago
- ☆262Oct 1, 2026Updated 3 weeks ago