Kirk3gaard / 2025-Crowdsource-GPU-basecalling-statsLinks
A repository for collecting GPU basecalling stats
☆64Updated this week
Alternatives and similar repositories for 2025-Crowdsource-GPU-basecalling-stats
Users that are interested in 2025-Crowdsource-GPU-basecalling-stats are comparing it to the libraries listed below
Sorting:
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆51Updated 9 months ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆30Updated last week
- Interactive quality assessment of genome assemblies☆107Updated 4 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 4 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated last week
- Reorients assembled microbial sequences☆126Updated 3 weeks ago
- Foreign Contamination Screening caller scripts and documentation☆138Updated 6 months ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆39Updated 3 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆80Updated last year
- A tool for removing redundant genomes from a set of assemblies☆76Updated last week
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆140Updated 3 weeks ago
- ☆83Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- A tool for Racon polishing of miniasm assemblies☆77Updated 2 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆183Updated 2 weeks ago
- IS mapping software☆56Updated 3 years ago
- Precise host read removal☆103Updated 2 weeks ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆47Updated 5 months ago
- Split k-mer analysis – version 2☆92Updated last month
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 5 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆75Updated 2 months ago
- Mobile Genetic Elements Retrieving Tool☆16Updated 3 months ago
- Pipeline to convert a haploid assembly into diploid☆103Updated 7 months ago
- SeqSero2☆38Updated last year
- Prediction of prophages from bacterial genomes☆79Updated 3 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆171Updated this week
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆70Updated 3 years ago