Alternatives and similar repositories for 2025-Crowdsource-GPU-basecalling-stats

Users that are interested in 2025-Crowdsource-GPU-basecalling-stats are comparing it to the libraries listed below

• bonsai-team / Porechop_ABI
  Adapter trimmer for Oxford Nanopore reads using ab initio method
  ☆52Updated 11 months ago
• avierstr / amplicon_sorter
  Sorts amplicons from Nanopore sequencing data based on similarity
  ☆39Updated 3 weeks ago
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆140Updated 2 months ago
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆113Updated 5 months ago
• gbouras13 / dnaapler
  Reorients assembled microbial sequences
  ☆128Updated 2 months ago
• moshi4 / ANIclustermap
  A tool for drawing ANI clustermap between all-vs-all microbial genomes
  ☆85Updated 5 months ago
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆147Updated 7 months ago
• MicrobialDarkMatter / nanomotif
  Nanomotif - a tool for identifying methylated motifs in metagenomic samples
  ☆32Updated this week
• cultivarium / MicrobeMod
  A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
  ☆50Updated last month
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆83Updated last month
• rrwick / Assembly-Dereplicator
  A tool for removing redundant genomes from a set of assemblies
  ☆77Updated last month
• bede / hostile
  Precise host read removal
  ☆107Updated last month
• vgl-hub / gfastats
  A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…
  ☆114Updated 4 months ago
• thanhleviet / ISfinder-sequences
  Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…
  ☆70Updated 5 years ago
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆78Updated last month
• rrwick / Metagenomics-Index-Correction
  ☆84Updated 2 years ago
• egonozer / in_silico_pcr
  Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.
  ☆47Updated 6 months ago
• adlape95 / Assembly-methods-nanopore
  Assembly methods for nanopore-based metagenomic sequencing: a comparative study
  ☆18Updated 5 years ago
• GaetanBenoitDev / metaMDBG
  MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
  ☆178Updated last month
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆99Updated 6 months ago
• linsalrob / PhiSpy
  Prediction of prophages from bacterial genomes
  ☆81Updated 4 months ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆105Updated 9 months ago
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆81Updated last year
• marbl / parsnp
  Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…
  ☆146Updated 3 weeks ago
• donovan-h-parks / CompareM
  A toolbox for comparative genomics.
  ☆105Updated 4 years ago
• BU-ISCIII / plasmidID
  PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…
  ☆41Updated 4 years ago
• gem-pasteur / Integron_Finder
  Bioinformatics tool to find integrons in bacterial genomes
  ☆81Updated 5 months ago
• MDU-PHL / abritamr
  A pipeline for running AMRfinderPlus and collating results into functional classes
  ☆81Updated 2 weeks ago
• rrwick / Bacsort
  a collection of scripts for organising bacterial genomes by species
  ☆81Updated 3 years ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆69Updated 4 years ago