A repository for collecting GPU basecalling stats
☆77Feb 10, 2026Updated 2 weeks ago
Alternatives and similar repositories for 2025-Crowdsource-GPU-basecalling-stats
Users that are interested in 2025-Crowdsource-GPU-basecalling-stats are comparing it to the libraries listed below
Sorting:
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.☆111May 10, 2024Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated 8 months ago
- A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.☆31Updated this week
- Extremely fast and accurate Nanopore demultiplexing☆81Jan 26, 2026Updated last month
- ☆11Nov 17, 2020Updated 5 years ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Apr 5, 2024Updated last year
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- Overview of our data for microbial genomic benchmarking☆35Feb 5, 2026Updated 3 weeks ago
- Visualise and analyse nanopore (ONT) raw signals☆128Dec 12, 2025Updated 2 months ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Apr 4, 2023Updated 2 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆203Feb 16, 2026Updated 2 weeks ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆12Jun 30, 2023Updated 2 years ago
- A Python package to update the MLST database for the mlst tool.☆18Jan 16, 2026Updated last month
- ☆11May 6, 2021Updated 4 years ago
- Simple-to-use interactive comparison of two bacterial genomes☆26Jan 30, 2026Updated last month
- Fast and scalable nanopore adaptive sampling☆35Jun 6, 2023Updated 2 years ago
- ☆30Dec 22, 2023Updated 2 years ago
- Plasmid analysis using rearrangement distances☆50Feb 19, 2026Updated last week
- Evaluating Nanopore-based bacterial variant calling☆21Jul 23, 2025Updated 7 months ago
- Remove lambda phage reads from a fastq file☆29Jan 16, 2023Updated 3 years ago
- Oxford Nanopore's Basecaller☆800Feb 19, 2026Updated last week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆23Sep 12, 2025Updated 5 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆148Jan 9, 2026Updated last month
- Metagenomic classification of long-read sequencing data☆102Jan 22, 2026Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆217Feb 23, 2026Updated last week
- Sketch-based surveillance platform☆13Dec 17, 2024Updated last year
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆19Updated this week
- a short-read polishing tool for long-read assemblies☆207Sep 19, 2025Updated 5 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Apr 26, 2025Updated 10 months ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 5 months ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆14Nov 15, 2021Updated 4 years ago
- Reorients assembled microbial sequences☆133Aug 21, 2025Updated 6 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆91May 3, 2025Updated 9 months ago
- ☆17Mar 21, 2023Updated 2 years ago
- ☆234Feb 3, 2026Updated 3 weeks ago
- Read Until client library for Nanopore Sequencing☆109Sep 25, 2024Updated last year
- ☆81Updated this week
- Graph-based assembly phasing☆91Nov 25, 2025Updated 3 months ago