althonos / pyorthoaniLinks
A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.
☆31Updated 4 months ago
Alternatives and similar repositories for pyorthoani
Users that are interested in pyorthoani are comparing it to the libraries listed below
Sorting:
- Strain-level haplotyping for metagenomes with short or long-reads.☆59Updated 8 months ago
- ☆24Updated 10 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Recombination-free trees☆62Updated 3 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 7 months ago
- Bacterial GWAS analysis☆46Updated last month
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 5 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last week
- Calculate assocations between genes and traits☆29Updated 9 months ago
- Gene-flank analysis tool☆34Updated 11 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Identify short variants and structural variants from raw sequencing data or genomic sequences☆34Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Genome size estimation from long read overlaps☆74Updated last week
- Plasmid analysis using rearrangement distances☆48Updated 3 months ago
- Discover and annotate the virome☆54Updated last month
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 4 months ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Updated 4 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 8 months ago
- MAGScoT - a MAG scoring and refinement tool☆39Updated last year
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆109Updated 2 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- viralFlye pipeline☆18Updated last year
- Remove human reads from a sequencing run☆45Updated last week
- A pipeline for bioinformatics analysis of bacterial genomes☆31Updated last week