gbouras13 / baktfoldLinks
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids using protein structural information
☆31Updated this week
Alternatives and similar repositories for baktfold
Users that are interested in baktfold are comparing it to the libraries listed below
Sorting:
- ☆23Updated this week
- A tool to detect acquired AMR genes directly from long read sequencing data.☆18Updated 3 months ago
- Simple-to-use interactive comparison of two bacterial genomes☆18Updated last week
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 9 months ago
- Genome size estimation from long read overlaps☆72Updated last week
- Plasmid analysis using rearrangement distances☆46Updated 2 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 3 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 3 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆56Updated 7 months ago
- Visualize microbial evolution at the SNP level!☆15Updated 3 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆33Updated 2 months ago
- REcombination BARcode detector.☆16Updated last year
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Updated 4 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- ☆10Updated 5 months ago
- Organism-specific interpretation of AMR genotypes☆14Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- µbinfie blog☆18Updated 4 months ago
- Chimera: A Versatile Metagenomic Classification Tool☆19Updated last week
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆18Updated 8 months ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆21Updated last year
- Generate basic stats for an assembly.☆13Updated 2 years ago
- Colinear block visualisation tool☆31Updated last year
- Genomic neighbor typing of bacterial pathogens using MinHash☆43Updated 2 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- software to identify primers that can distinguish genomes☆20Updated 3 weeks ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆34Updated 11 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆31Updated last week