Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.
☆96Aug 7, 2026Updated last week
Alternatives and similar repositories for centrifuger
Users that are interested in centrifuger are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆316Feb 3, 2026Updated 6 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆182Jul 22, 2026Updated 3 weeks ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆163Jul 3, 2026Updated last month
- alignment-free coverage calculation for metagenomic binning >100 times faster☆56May 8, 2026Updated 3 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆228May 9, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆55Jun 10, 2026Updated 2 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆69Apr 10, 2025Updated last year
- Precise host read removal☆129Apr 13, 2026Updated 4 months ago
- sunburst plots for taxonomy - working to update Krona☆46Sep 22, 2025Updated 10 months ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 3 months ago
- ☆16Jan 28, 2026Updated 6 months ago
- ☆20Jan 13, 2026Updated 7 months ago
- Fast DNA search and [host] depletion using minimizers☆121Updated this week
- A SIMD-accelerated library to compute random minimizers☆46Jul 7, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast and space-efficient taxonomic classification of long reads☆46Jul 16, 2026Updated 3 weeks ago
- Basecalling configuration prediction through FASTQ files☆34Mar 17, 2026Updated 4 months ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆106Jul 20, 2026Updated 3 weeks ago
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 3 months ago
- Methods to determine sequence element (unitig) presence/absence☆27Mar 6, 2026Updated 5 months ago
- Approximate nearest neighbour search for microbial genomes based on hash metric☆66Jun 10, 2026Updated 2 months ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆224Updated this week
- Genome size estimation from long read overlaps☆92Aug 4, 2026Updated last week
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 8 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆44Dec 18, 2025Updated 7 months ago
- Kun-peng: an ultra-fast, low-memory footprint and accurate taxonomy classifier for all☆144Mar 19, 2026Updated 4 months ago
- ☆27Jun 16, 2026Updated last month
- Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads☆51Aug 3, 2026Updated last week
- ☆10Jun 9, 2025Updated last year
- Ultra-rapid detection of viral variants directly from sequencing data☆47Updated this week
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated last month
- Chimera: A Versatile Metagenomic Classification Tool☆21Updated this week
- Assessing the quality of metagenome-derived genome bins using machine learning☆275Mar 20, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆28Feb 6, 2023Updated 3 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆62Jul 31, 2026Updated 2 weeks ago
- Graph-based assembly phasing☆99Nov 25, 2025Updated 8 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆260May 13, 2026Updated 3 months ago
- Remove human reads from a sequencing run☆52Jun 29, 2026Updated last month
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 5 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆233Updated this week