mourisl / centrifuger
Classifier for metagenomic sequences using FM-index with run-block compressed BWT.
☆39Updated last month
Related projects: ⓘ
- Pan-Genomic Matching Statistics☆45Updated 5 months ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆27Updated 4 months ago
- mGEMS Genomic epidemiology with mixed samples☆15Updated 2 weeks ago
- Differential k-mer analysis☆33Updated 7 months ago
- Automated strain separation of low-complexity metagenomes☆47Updated 2 years ago
- Genomewide Epistasis Analysis on Bacteria☆12Updated this week
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 7 months ago
- Find Unique genomic Regions☆29Updated 2 weeks ago
- reference-based long read assemblies of bacterial genomes☆46Updated 3 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆30Updated last week
- Fast and space-efficient taxonomic classification of long reads☆41Updated last month
- Split k-mer analysis – version 2☆57Updated last month
- OPAL: Open-community Profiling Assessment tooL☆26Updated 3 weeks ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 7 months ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- Correcting errors in noisy long reads using variation graphs☆49Updated last year
- Recombination-free trees☆55Updated last year
- Remove lambda phage reads from a fastq file☆27Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆33Updated 7 months ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆41Updated 3 months ago
- Fulgor is a fast and space-efficient colored de Bruijn graph index.☆43Updated 3 weeks ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 3 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- ☆27Updated 8 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆34Updated 9 months ago
- Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.☆18Updated 4 months ago
- Ancient microbiome snakemake workflow☆19Updated 2 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆35Updated last month
- STAG: Species Tree from All Genes☆31Updated 5 years ago