Alternatives and similar repositories for centrifuger

Users that are interested in centrifuger are comparing it to the libraries listed below

• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆69Updated 4 years ago
• shandley / hecatomb
  hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
  ☆59Updated 2 months ago
• katerinakazantseva / strainy
  Graph-based assembly phasing
  ☆90Updated 2 weeks ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆54Updated last year
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆106Updated 3 months ago
• rrwick / Assembly-Dereplicator
  A tool for removing redundant genomes from a set of assemblies
  ☆77Updated 3 months ago
• shenwei356 / gtdb-taxdump
  GTDB taxonomy taxdump files with trackable TaxIds
  ☆56Updated 7 months ago
• jts / assembly_accuracy
  tools for assessing the accuracy of genome assemblies
  ☆35Updated last year
• jordanlab / stringMLST
  Fast k-mer based tool for multi locus sequence typing (MLST)
  ☆45Updated 5 years ago
• bacpop / ska.rust
  Split k-mer analysis – version 2
  ☆101Updated last month
• Kirk3gaard / 2023-basecalling-benchmarks
  ☆30Updated last year
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆89Updated 3 weeks ago
• bcgsc / ntJoin
  🔗Genome assembly scaffolder using minimizer graphs
  ☆85Updated last year
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆86Updated this week
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆80Updated 9 months ago
• bacpop / ggCaller
  Bifrost graph gene caller.
  ☆96Updated 2 months ago
• wtmatlock / flanker
  Gene-flank analysis tool
  ☆34Updated 11 months ago
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆78Updated 3 months ago
• citiususc / veryfasttree
  Efficient phylogenetic tree inference for massive taxonomic datasets
  ☆135Updated 8 months ago
• simonrharris / SKA
  Split Kmer Analysis
  ☆65Updated 3 years ago
• bonsai-team / Porechop_ABI
  Adapter trimmer for Oxford Nanopore reads using ab initio method
  ☆54Updated last year
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆51Updated last month
• fanglab / nanodisco
  nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…
  ☆71Updated 3 years ago
• ythuang0522 / homopolish
  High-quality Nanopore-only genome polisher
  ☆69Updated last year
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆91Updated 2 weeks ago
• metagenlab / mummer2circos
  Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments
  ☆107Updated 2 years ago
• AliTVTeam / AliTV
  Visualize whole genome alignments as linear maps
  ☆74Updated 4 months ago
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆116Updated this week
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆75Updated 3 years ago
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆71Updated 2 months ago