wh-xu / Hyper-GenLinks
HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors
☆29Updated last year
Alternatives and similar repositories for Hyper-Gen
Users that are interested in Hyper-Gen are comparing it to the libraries listed below
Sorting:
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 3 weeks ago
- Remove human reads from a sequencing run☆39Updated last month
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆26Updated 3 weeks ago
- software to identify primers that can distinguish genomes☆20Updated 7 months ago
- Manipulate and generate figures for trees in Newick format☆22Updated last month
- A novel method for sequence similarity estimation☆28Updated last year
- Simple-to-use interactive comparison of two bacterial genomes☆16Updated 2 weeks ago
- sunburst plots for taxonomy - working to update Krona☆40Updated last month
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆42Updated 3 weeks ago
- k-mers and the like☆22Updated last week
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Updated last year
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 10 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆23Updated last week
- ☆45Updated last month
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Updated 9 months ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated 3 weeks ago
- Basecalling configuration prediction through FASTQ files☆21Updated 4 months ago
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆22Updated 7 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 7 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆37Updated last year
- Viral genome coverage evaluation for metagenomic diagnostics☆27Updated last month
- Genome size estimation from long read overlaps☆60Updated 2 weeks ago
- Tool for exploring sequence alignment algorithms☆13Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆32Updated 10 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆34Updated 2 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 5 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 4 months ago
- Drug Resistance Prediction with Reference Graphs☆21Updated 2 years ago
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆45Updated 2 months ago