HudsonAlpha / fmlrc2Links
☆48Updated 2 years ago
Alternatives and similar repositories for fmlrc2
Users that are interested in fmlrc2 are comparing it to the libraries listed below
Sorting:
- ✏️ Genome assembly polishing & SNV detection☆69Updated last month
- PGR-TK: Pangenome Research Tool Kit☆100Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆44Updated 2 weeks ago
- flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.☆38Updated last year
- linearize and simplify variation graphs using blocked partial order alignment☆58Updated 2 weeks ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆90Updated 8 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Pan-Genomic Matching Statistics☆53Updated last year
- 🔗Genome assembly scaffolder using minimizer graphs☆84Updated 10 months ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆79Updated 3 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆41Updated 3 months ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆63Updated this week
- implicit pangenome graph☆67Updated last week
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 2 weeks ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆75Updated 4 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 3 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆76Updated 4 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆102Updated 10 months ago
- ☆62Updated last month
- Mumemto: multi-MUM and MEM finding across pangenomes☆103Updated 3 weeks ago
- ☆21Updated 7 months ago
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆41Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- Creating alignment plots from bam files☆65Updated this week
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- A battery of methylation tools for PacBio HiFi reads☆40Updated 3 weeks ago