HudsonAlpha / fmlrc2

Related projects ⓘ

Alternatives and complementary repositories for fmlrc2

• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated last year
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆34Updated last year
• wdecoster / kyber
  ☆18Updated this week
• bluenote-1577 / flopp
  flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.
  ☆35Updated last year
• GeneDx / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆94Updated 6 months ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated last week
• pangenome / smoothxg
  linearize and simplify variation graphs using blocked partial order alignment
  ☆56Updated this week
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆64Updated this week
• bcgsc / LINKS
  ⛓ Long Interval Nucleotide K-mer Scaffolder
  ☆73Updated 11 months ago
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆34Updated 9 months ago
• mourisl / centrifuger
  Classifier for metagenomic sequences using FM-index with run-block compressed BWT.
  ☆51Updated this week
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆45Updated 3 years ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆71Updated 3 weeks ago
• VGP / vgp-tools
  ☆28Updated last year
• bcgsc / RAILS
  🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling
  ☆27Updated 10 months ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆48Updated 3 years ago
• shilpagarg / WHdenovo
  ☆47Updated 4 years ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆45Updated 3 years ago
• kensung-lab / hypo
  HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies
  ☆59Updated 4 years ago
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆64Updated last year
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆34Updated 3 weeks ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated 4 months ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated this week
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆28Updated last month
• iqbal-lab-org / clockwork
  CRyPTIC data processing pipelines
  ☆31Updated 4 months ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆38Updated 3 weeks ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 4 years ago
• RKMlab / perf
  PERF is an Exhaustive Repeat Finder
  ☆33Updated 3 years ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆48Updated 7 months ago
• bacpop / ska.rust
  Split k-mer analysis – version 2
  ☆70Updated 3 weeks ago