Alternatives and similar repositories for fmlrc2

Users that are interested in fmlrc2 are comparing it to the libraries listed below

• bluenote-1577 / flopp
  flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.
  ☆37Updated 2 years ago
• pangenome / impg
  implicit pangenome graph
  ☆85Updated this week
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆71Updated 2 months ago
• bcgsc / LINKS
  ⛓ Long Interval Nucleotide K-mer Scaffolder
  ☆74Updated 8 months ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆45Updated 4 months ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆47Updated 5 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆37Updated last week
• lh3 / longdust
  Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome
  ☆84Updated 3 weeks ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆106Updated 3 months ago
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆44Updated 2 weeks ago
• warp9seq / minimod
  A bioinformatics tool for viewing and calculating base modification frequencies from BAM files
  ☆40Updated this week
• wdecoster / kyber
  ☆21Updated 11 months ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆38Updated 2 months ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆47Updated 3 months ago
• OmarOakheart / nPhase
  Ploidy agnostic phasing pipeline and algorithm
  ☆48Updated last year
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆50Updated 3 weeks ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆33Updated 2 years ago
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆80Updated 8 months ago
• koszullab / instaGRAAL
  Large genome reassembly based on Hi-C data, continuation of GRAAL
  ☆43Updated last year
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆39Updated 2 years ago
• wdecoster / nanolyse
  Remove lambda phage reads from a fastq file
  ☆29Updated 2 years ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆47Updated last year
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 7 months ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆56Updated 4 months ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 6 months ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆54Updated last year
• pangenome / smoothxg
  linearize and simplify variation graphs using blocked partial order alignment
  ☆59Updated 4 months ago
• mrvollger / NucFreq
  ☆38Updated 2 months ago