calacademy-research / minibar
Dual barcode and primer demultiplexing for MinION sequenced reads
☆39Updated 2 years ago
Alternatives and similar repositories for minibar:
Users that are interested in minibar are comparing it to the libraries listed below
- Generates an NCBI .tbl file of annotations on a genome.☆65Updated 6 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 3 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆50Updated 2 years ago
- Synteny Imager☆60Updated 4 months ago
- IS mapping software☆53Updated 3 years ago
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆53Updated last month
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆38Updated last month
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆40Updated last week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- Visualize whole genome alignments as linear maps☆70Updated 3 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆28Updated 4 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- Automatically exported from code.google.com/p/prottest3☆36Updated 6 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated 10 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆70Updated 5 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- ☆79Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆44Updated 3 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- ☆23Updated 6 years ago
- Official Repository of the Oyster River Protocol for Transcriptome Assembly☆16Updated 3 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆68Updated 2 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated 9 months ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- Add new taxa or taxonomic groups to the NCBI Taxdump files☆19Updated 4 years ago