Dual barcode and primer demultiplexing for MinION sequenced reads
☆42Jan 19, 2023Updated 3 years ago
Alternatives and similar repositories for minibar
Users that are interested in minibar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆67Apr 21, 2025Updated last year
- Tool for demultiplexing Nanopore barcode sequence data☆25Mar 9, 2026Updated 4 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Jan 18, 2021Updated 5 years ago
- Extremely fast and accurate Nanopore demultiplexing☆98Jun 27, 2026Updated last week
- A selection of short scripts for analyzing microbial genomes☆14Jun 26, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- ☆17Jul 1, 2026Updated last week
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Jun 9, 2023Updated 3 years ago
- ☆82Oct 27, 2020Updated 5 years ago
- adapter trimmer for Oxford Nanopore reads☆384May 8, 2024Updated 2 years ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆117Nov 20, 2023Updated 2 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Feb 3, 2020Updated 6 years ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Filtering and trimming of long read sequencing data☆218Jan 16, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Quality control for MinION sequencing data☆219Mar 17, 2026Updated 3 months ago
- Batch domestication of genetic parts with Python☆16May 12, 2025Updated last year
- consensus approach for community profiling with nanopore amplicon sequencing data☆17Sep 30, 2024Updated last year
- ☆11Mar 29, 2025Updated last year
- Parser for Ghost Koala☆10Aug 23, 2018Updated 7 years ago
- quality filtering tool for long reads☆404Sep 17, 2025Updated 9 months ago
- Structural variant caller for low-depth long-read sequencing data☆49Feb 5, 2026Updated 5 months ago
- Count and compare 16S rRNA genes within a genus☆16Aug 1, 2024Updated last year
- Correcting errors in noisy long reads using variation graphs☆52Nov 17, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆14Sep 26, 2019Updated 6 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆100Jul 12, 2024Updated last year
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Webserver and command line tool for annotating engineered plasmids☆17May 19, 2026Updated last month
- Genome assembly soft-masking using Red (REpeat Detector)☆18Dec 7, 2018Updated 7 years ago
- PuntSeq - Chasing the microbial diversity of Cambridge's freshwater☆20Nov 12, 2020Updated 5 years ago
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆17Dec 30, 2025Updated 6 months ago
- CLI tool for flexible and fast adaptive sampling on ONT sequencers☆197Feb 25, 2026Updated 4 months ago
- k-mer counting software☆43Feb 8, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 3 years ago
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆15Dec 5, 2025Updated 7 months ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 3 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Jun 4, 2026Updated last month
- A versatile toolkit for k-mers with taxonomic information☆84Aug 28, 2025Updated 10 months ago