calacademy-research / minibar
Dual barcode and primer demultiplexing for MinION sequenced reads
☆38Updated 2 years ago
Alternatives and similar repositories for minibar:
Users that are interested in minibar are comparing it to the libraries listed below
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆55Updated this week
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆72Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Synteny Imager☆61Updated 7 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 5 months ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- ☆77Updated 4 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Visualize whole genome alignments as linear maps☆72Updated 7 months ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆54Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Automated de novo assembly of whole chloroplast genomes.☆45Updated 7 months ago
- Rank-based Gene Ontology analysis of gene expression data☆41Updated 2 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- Micro 612 genomics workshop☆37Updated 4 years ago
- Genome Annotation Without Nightmares☆44Updated 3 months ago
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- IS mapping software☆53Updated 3 years ago
- Official Repository of the Oyster River Protocol for Transcriptome Assembly☆16Updated 3 years ago
- ☆81Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- de.NBI Nanopore Training Course☆20Updated 2 years ago