calacademy-research / minibarLinks
Dual barcode and primer demultiplexing for MinION sequenced reads
☆41Updated 2 years ago
Alternatives and similar repositories for minibar
Users that are interested in minibar are comparing it to the libraries listed below
Sorting:
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 8 years ago
- Visualize whole genome alignments as linear maps☆73Updated 3 weeks ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- k-mer learning materials☆74Updated 6 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 4 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Synteny Imager☆64Updated last month
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆59Updated 4 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆71Updated 3 years ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆58Updated last year
- ☆84Updated last year
- ☆35Updated 2 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Filter SAM file for soft and hard clipped alignments☆53Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆108Updated last month
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆53Updated last month
- ☆64Updated last month
- ☆78Updated 4 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 9 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 4 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆63Updated 11 months ago
- ☆31Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated 9 months ago