calacademy-research / minibarLinks
Dual barcode and primer demultiplexing for MinION sequenced reads
☆39Updated 2 years ago
Alternatives and similar repositories for minibar
Users that are interested in minibar are comparing it to the libraries listed below
Sorting:
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆56Updated last month
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Synteny Imager☆62Updated 9 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆67Updated 7 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 6 months ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Micro 612 genomics workshop☆37Updated 4 years ago
- ☆35Updated 2 years ago
- ☆78Updated 4 years ago
- Visualize whole genome alignments as linear maps☆72Updated 8 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆70Updated 3 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆95Updated 3 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆66Updated 5 months ago
- ☆82Updated last year
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆42Updated 2 months ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- ☆44Updated 8 years ago
- IS mapping software☆54Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated last year
- Automatically exported from code.google.com/p/prottest3☆36Updated 7 years ago