cschin / multi-tabixLinks
multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.
☆10Updated 3 years ago
Alternatives and similar repositories for multi-tabix
Users that are interested in multi-tabix are comparing it to the libraries listed below
Sorting:
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated last year
- ☆22Updated 6 months ago
- v2.x of the microassembly based somatic variant caller☆23Updated last month
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Model files for Sentieon variant callers☆16Updated last month
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- maze: match visualizer☆9Updated 3 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 8 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆20Updated this week
- ☆16Updated last week
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Unfazed by genomic variant phasing☆26Updated last year
- ☆21Updated 2 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Updated last year
- Split a BAM file by haplotype support☆16Updated 7 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated this week
- BigWig manpulation tools using libBigWig and htslib☆29Updated 10 months ago
- Tools for merging Tandem Repeat VCF files☆29Updated last month
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- convert CHAIN format to PAF format☆14Updated 5 months ago
- Haplotype phaser for next-generation sequencing data☆13Updated 3 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated 2 years ago
- Structural variant pipeline☆17Updated 4 years ago