cschin / multi-tabixLinks
multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.
☆10Updated 3 years ago
Alternatives and similar repositories for multi-tabix
Users that are interested in multi-tabix are comparing it to the libraries listed below
Sorting:
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- ☆21Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- bedtools-like functionality for interval sets in rust☆55Updated 4 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆23Updated this week
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆31Updated last month
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last year
- v2.x of the microassembly based somatic variant caller☆23Updated 4 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 6 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- Numerical Encoding for Human Genetic Variants☆42Updated 2 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last month
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated this week
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 months ago
- Human mitochondrial variants annotation using HmtVar.☆18Updated 2 years ago
- The python binding for D4 format☆16Updated 4 years ago
- BUS format specification☆13Updated 6 years ago
- Fast sequencing data quality metrics☆31Updated 3 months ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- A high-performance search engine for large-scale genomic interval datasets☆19Updated 4 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago