cschin / multi-tabix
multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.
☆10Updated 3 years ago
Alternatives and similar repositories for multi-tabix:
Users that are interested in multi-tabix are comparing it to the libraries listed below
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- ☆22Updated 4 months ago
- v2.x of the microassembly based somatic variant caller☆20Updated last week
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆19Updated this week
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 6 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 2 weeks ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated last month
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated 11 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 9 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- bedtools-like functionality for interval sets in rust☆51Updated 7 months ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Sample Contamination Estimate from VCF☆19Updated 4 months ago
- Hidden Markov Model based Copy number caller☆20Updated 5 months ago
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆28Updated 8 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- horizontal pileup☆16Updated 2 years ago
- ☆14Updated 3 weeks ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- sort genomic data☆35Updated 4 years ago
- Structural variant (SV) analysis tools☆36Updated 9 months ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆13Updated last year
- Structural variant pipeline☆17Updated 4 years ago