multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.
☆10Jan 7, 2022Updated 4 years ago
Alternatives and similar repositories for multi-tabix
Users that are interested in multi-tabix are comparing it to the libraries listed below
Sorting:
- A Boolean Algebra for Genetic Variants☆12Updated this week
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- Naive PCA for genotype data☆10Jul 27, 2016Updated 9 years ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- A web tool that helps biomedical researchers understand how their work is being used by others, by analyzing the content in papers that c…☆13Oct 19, 2018Updated 7 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Apr 22, 2024Updated last year
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Apr 30, 2024Updated last year
- Gene lists related to cancer immunotherapy☆14Sep 11, 2024Updated last year
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- Utility functions for FACETS☆39Oct 24, 2025Updated 4 months ago
- ziglang + htslib☆21Oct 31, 2021Updated 4 years ago
- Package for pairwise operations in {dplyr}.☆13Jul 1, 2022Updated 3 years ago
- BUS format specification☆13Nov 18, 2019Updated 6 years ago
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Feb 7, 2026Updated 3 weeks ago
- HiCtrans is a pipeline to call translocations from Hi-C data☆17Sep 27, 2021Updated 4 years ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 5 years ago
- ☆101Apr 22, 2024Updated last year
- bgzip support for Rust☆18Nov 16, 2023Updated 2 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Model files for Sentieon variant callers☆16Updated this week
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 6 years ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated last month
- Deep learning-based structural variant filtering method☆39Nov 19, 2023Updated 2 years ago
- ☆21Dec 26, 2025Updated 2 months ago
- 🐶 hlabud: HLA genotype analysis in R☆17Apr 11, 2025Updated 10 months ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆47Jun 7, 2023Updated 2 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- PGR-TK: Pangenome Research Tool Kit☆21Mar 13, 2025Updated 11 months ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated last month
- Minhash and maxhash library in Python, combining flexibility, expressivity, and performance.☆22Dec 14, 2024Updated last year
- expressions on VCFs☆91Apr 19, 2025Updated 10 months ago
- Library for manipulating genomic variants and predicting their effects☆86Feb 16, 2026Updated 2 weeks ago
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 5 years ago