Alternatives and similar repositories for rust-wfa2:

Users that are interested in rust-wfa2 are comparing it to the libraries listed below

• Walfred-MA / Ctyper
  Genotyping of copy number sensitive allele-specific haplotypes
  ☆16Updated last month
• T2T-apes / ape_pangenome
  pangenome analyses for complete genomes of great apes (and gibbon)
  ☆17Updated 5 months ago
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆14Updated 6 months ago
• AndreaGuarracino / chain2paf
  convert CHAIN format to PAF format
  ☆14Updated 3 months ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆23Updated 2 months ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated 7 months ago
• AndreaGuarracino / 1000G-ONT-F100-PGGB
  PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium
  ☆12Updated last year
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆36Updated last year
• MoinSebi / gfa2bin
  ☆18Updated 3 months ago
• marbl / training
  Genome Assembly 102
  ☆14Updated 2 months ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated 9 months ago
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆18Updated 4 years ago
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆19Updated this week
• Gaius-Augustus / clamsa
  ClaMSA (Classify Multiple Sequence Alignments).
  ☆11Updated 4 months ago
• lrobidou / KFC
  ☆16Updated last month
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 5 months ago
• mskilab-org / pgv
  Pan gGnome Viewer
  ☆10Updated last year
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆21Updated last month
• MoinSebi / gSV
  ☆11Updated 2 years ago
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆34Updated 2 months ago
• hitbc / gcSV
  ☆16Updated last month
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 9 months ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆28Updated 3 months ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆17Updated 4 months ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• dubssieg / pancat
  Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
  ☆33Updated 2 months ago
• collaborativebioinformatics / nibSV
  ☆9Updated 3 years ago
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆12Updated 6 years ago