tanghaibao / rust-wfa2View external linksLinks
Rust binding for WFA2-lib
☆10Jun 7, 2022Updated 3 years ago
Alternatives and similar repositories for rust-wfa2
Users that are interested in rust-wfa2 are comparing it to the libraries listed below
Sorting:
- Convert HAL to VG☆23Aug 12, 2024Updated last year
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 3 weeks ago
- convert PAF format to CHAIN format☆34May 14, 2025Updated 9 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 5 months ago
- ☆15Jun 29, 2021Updated 4 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Multiple sequence alignment of long tandem repeats☆25Jan 9, 2026Updated last month
- Fast and exact gap-affine partial order alignment☆59Feb 3, 2026Updated last week
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- ☆28Aug 7, 2025Updated 6 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 8 months ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated 7 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 3 months ago
- ☆11Dec 9, 2022Updated 3 years ago
- ☆12Jul 4, 2022Updated 3 years ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated 10 months ago
- alignment to variation graph inducer☆157Jan 20, 2026Updated 3 weeks ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- ☆101Apr 22, 2024Updated last year
- WinPCA. A package for windowed principal component analysis.☆45Feb 2, 2026Updated last week
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 3 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- ANI based satellite annotation☆23Nov 7, 2025Updated 3 months ago
- Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research☆14Nov 29, 2021Updated 4 years ago
- ☆29Mar 27, 2024Updated last year
- PCA in rust☆16Jul 30, 2023Updated 2 years ago
- A bridge from C++ to Python logging☆13Nov 28, 2024Updated last year
- A LaTeX package for drawing genetic construct pictograms using TikZ.☆11Jan 26, 2022Updated 4 years ago
- RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)☆11Mar 20, 2024Updated last year
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Genome Assembly 102☆17Apr 23, 2025Updated 9 months ago
- Bioinformatics Algorithms implemented in Rust for Learners☆31Aug 1, 2021Updated 4 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 8 months ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆135Oct 26, 2025Updated 3 months ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Jan 27, 2026Updated 2 weeks ago
- Methylation analysis pipeline for genome graph☆14May 25, 2025Updated 8 months ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Aug 7, 2023Updated 2 years ago
- GFA parser in Rust☆30May 26, 2023Updated 2 years ago