taylor-lab / annotateMafLinks
Add functional variant annotation to MAF file
☆11Updated last year
Alternatives and similar repositories for annotateMaf
Users that are interested in annotateMaf are comparing it to the libraries listed below
Sorting:
- MEM mapper prototype☆13Updated 4 years ago
- Detects human contamination in bam files☆16Updated 5 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- ☆21Updated 11 months ago
- ☆13Updated 8 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 weeks ago
- Pan gGnome Viewer☆10Updated 4 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated last year
- ☆13Updated 9 years ago
- CLI to automate Nextflow pipeline testing☆12Updated 3 weeks ago
- nimble aligner that will map your reads to the references on a laptop☆11Updated 8 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Updated 6 years ago
- ☆11Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated last year
- Machine learning use cases for teaching☆13Updated 8 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 6 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Updated 6 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 3 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Updated 2 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Updated 7 years ago
- Allele frequency filter app☆14Updated 3 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Updated 9 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated last year
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 2 months ago