thegenemyers / ONEcodeLinks
1-code framework: docs, C-library, and tools
☆23Updated last week
Alternatives and similar repositories for ONEcode
Users that are interested in ONEcode are comparing it to the libraries listed below
Sorting:
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆66Updated last year
- Efficient, parallel compression for terabyte-scale data☆48Updated 2 weeks ago
- ☆28Updated 6 months ago
- A repository for generating strobemers and evalaution☆78Updated last year
- Filter of Pairwise Alignement☆44Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 6 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆54Updated last week
- Index kmtricks bf matrices☆45Updated this week
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 2 months ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Graph based multi genome aligner☆48Updated 4 years ago
- ☆45Updated 2 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆26Updated 5 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 4 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- strange cross-platform, performance-oriented and interactive pangenome and large graph visualization☆42Updated this week
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆36Updated 10 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 2 months ago
- linearize and simplify variation graphs using blocked partial order alignment☆57Updated 2 months ago
- ☆62Updated 3 weeks ago
- K-mer substring space decomposition☆43Updated last month
- A k-mer search engine for all Sequence Read Archive public accessions☆32Updated 11 months ago
- ☆28Updated last year
- A versatile compressor of third generation sequencing reads.☆51Updated last year
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Updated 6 years ago
- Bidirectional WFA (Paper)☆47Updated last year
- ☆32Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago