thegenemyers / ONEcodeLinks
1-code framework: docs, C-library, and tools
☆21Updated 5 months ago
Alternatives and similar repositories for ONEcode
Users that are interested in ONEcode are comparing it to the libraries listed below
Sorting:
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- ☆42Updated 2 weeks ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 8 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Wavefront alignment algorithm (WFA) in Golang☆29Updated 8 months ago
- Efficient low-divergence mapping of long reads in minimizer space☆67Updated last year
- Differential k-mer analysis☆36Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆51Updated this week
- Fast and exact gap-affine partial order alignment☆52Updated last week
- ☆28Updated 9 months ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆64Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- Pan-Genomic Matching Statistics☆52Updated last year
- ☆34Updated 5 years ago
- Tumour-only somatic mutation calling using long reads☆27Updated 8 months ago
- A versatile compressor of third generation sequencing reads.☆51Updated last year
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 8 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last week
- Targeted genotyper for complex polymorphic genes☆20Updated 2 weeks ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 3 weeks ago
- ☆32Updated 2 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆28Updated 3 months ago
- General purpose utility related to GAF files☆28Updated 2 weeks ago
- implicit pangenome graph☆66Updated this week