1-code framework: docs, C-library, and tools
☆28Aug 14, 2026Updated last month
Alternatives and similar repositories for ONEcode
Users that are interested in ONEcode are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ONEcode package to replace SAM/BAM, especially for eDNA mapping to everything☆20Aug 17, 2026Updated last month
- a GFA toolkit☆13Oct 4, 2024Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆48Aug 28, 2026Updated 3 weeks ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated last year
- Pairwise whole genome aligner☆244Sep 4, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Implicit Interval Tree with Interpolation Index☆43Jul 13, 2022Updated 4 years ago
- Core library of the Genome Analysis Toolbox with de-Bruijn graph☆66Feb 1, 2025Updated last year
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆29Updated this week
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 9 years ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- A fast K-mer counter for high-fidelity shotgun datasets☆148Jan 19, 2026Updated 8 months ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 8 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆63Sep 15, 2025Updated last year
- WFA-lib: Wavefront alignment algorithm library v2☆228Aug 7, 2026Updated last month
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Apr 9, 2024Updated 2 years ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆77Jun 17, 2024Updated 2 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- ☆18Updated this week
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Mar 8, 2022Updated 4 years ago
- Identification of transposable element families from pangenome polymorphisms☆56Aug 11, 2026Updated last month
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆227Aug 11, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆142Jun 23, 2024Updated 2 years ago
- ☆59Dec 12, 2023Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated 4 months ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- JTK -- a regional diploid genome assembler☆27Apr 22, 2026Updated 4 months ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆115Jul 11, 2026Updated 2 months ago
- a string to graph aligner☆41Jul 5, 2016Updated 10 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 3 years ago
- A post-mapping authentication toolkit for ancient metagenomics☆22Mar 30, 2026Updated 5 months ago
- an API for intersections of genomic data☆149Updated this week
- A k-mer search engine for all Sequence Read Archive public accessions☆46May 13, 2026Updated 4 months ago
- ☆14Oct 14, 2020Updated 5 years ago
- Banded Striped DNA Sequence Alignment☆54May 9, 2023Updated 3 years ago