edawson / svaha
Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
☆12Updated 11 months ago
Alternatives and similar repositories for svaha:
Users that are interested in svaha are comparing it to the libraries listed below
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Hidden Markov Model based Copy number caller☆20Updated 3 months ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 3 years ago
- GBWT-based handle graph☆31Updated last week
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Updated last year
- ☆28Updated last year
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Variant call adjudication☆16Updated 8 months ago
- Parallel Sequence to Graph Alignment☆35Updated 2 years ago
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 3 years ago
- ☆25Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 9 months ago
- ☆15Updated 4 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Population genetics analysis on VG☆17Updated 3 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- ☆12Updated 3 years ago
- Optimized sequence graph implementations for graph genomics☆34Updated 2 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Updated 3 years ago
- Long-read aligner to pangenome graphs☆26Updated 9 months ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- ☆16Updated 3 years ago