Linear-time, low-memory construction of variation graphs
☆20Aug 28, 2026Updated this week
Alternatives and similar repositories for svaha2
Users that are interested in svaha2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- GBWT-based handle graph☆35Aug 19, 2026Updated 2 weeks ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 9 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆11Dec 9, 2022Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 5 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 9 years ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- Integrated Variant Caller☆17Mar 15, 2018Updated 8 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆73Apr 15, 2020Updated 6 years ago
- ☆16Aug 14, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- ☆26Jul 1, 2026Updated 2 months ago
- Toolkit for calling structural variants using short or long reads☆117Aug 21, 2026Updated last week
- A Strategy for Building and Using a Human Reference Pangenome☆71May 29, 2020Updated 6 years ago
- ☆21Nov 1, 2019Updated 6 years ago
- Parallel Sequence to Graph Alignment☆35Nov 26, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Implicit Interval Tree with Interpolation Index☆43Jul 13, 2022Updated 4 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 7 months ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- ☆46Jun 21, 2020Updated 6 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆222Updated this week
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 13 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆27Oct 28, 2021Updated 4 years ago
- Numerical Encoding for Human Genetic Variants☆43Jun 8, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆76Feb 19, 2019Updated 7 years ago
- Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), ad…☆33Jul 12, 2020Updated 6 years ago
- Structural variant merging tool☆57Aug 23, 2024Updated 2 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Jul 2, 2026Updated 2 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆109Dec 14, 2020Updated 5 years ago
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆52Sep 15, 2021Updated 4 years ago
- NovoGraph: building whole genome graphs from long-read-based de novo assemblies☆46Feb 23, 2021Updated 5 years ago