edawson / svaha2Links
Linear-time, low-memory construction of variation graphs
☆20Updated 5 years ago
Alternatives and similar repositories for svaha2
Users that are interested in svaha2 are comparing it to the libraries listed below
Sorting:
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- ☆12Updated 2 months ago
- Pan gGnome Viewer☆10Updated last year
- Detects human contamination in bam files☆16Updated 4 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- Genome assembly quality improvement assisted by alternative assemblies and paired-end Illumina reads☆7Updated 6 years ago
- ☆15Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- Benchmark structural variant calls against a reference set☆17Updated 8 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- GBWT-based handle graph☆31Updated 3 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- ☆28Updated 2 months ago
- ☆12Updated 3 years ago
- Variant call adjudication☆16Updated last year
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago