ocxtal / rbreadLinks
Header-only, gzread-like reader for gzip, bz2, and xz.
☆12Updated 7 years ago
Alternatives and similar repositories for rbread
Users that are interested in rbread are comparing it to the libraries listed below
Sorting:
- nimble aligner that will map your reads to the references on a laptop☆12Updated 8 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 7 years ago
- ☆25Updated 4 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- ☆28Updated 4 months ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Updated 5 years ago
- ☆11Updated 2 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 4 years ago
- Long Approximate Matches-based Split Aligner☆13Updated 8 years ago
- Utilities to detect and profile `het-kmers`☆11Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- ☆25Updated 4 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Updated 4 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 2 years ago
- ☆14Updated 5 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 5 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- Pan-genome Seed Index☆20Updated 5 months ago
- Detects human contamination in bam files☆16Updated 4 years ago
- ☆14Updated 4 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆13Updated 5 years ago
- GBWT-based handle graph☆31Updated last month
- ☆14Updated 5 years ago
- Fast and cache-efficient full-text pangenome index☆29Updated last week