Header-only, gzread-like reader for gzip, bz2, and xz.
☆11Aug 8, 2018Updated 7 years ago
Alternatives and similar repositories for rbread
Users that are interested in rbread are comparing it to the libraries listed below
Sorting:
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated last year
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 3 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆40Jul 15, 2019Updated 6 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 3 months ago
- ☆32Dec 16, 2022Updated 3 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 4 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆27Oct 28, 2021Updated 4 years ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 8 months ago
- In-place Parallel Super Scalar Radix Sort (IPS²Ra)☆36Jan 15, 2025Updated last year
- ☆24Aug 25, 2025Updated 6 months ago
- a string to graph aligner☆41Jul 5, 2016Updated 9 years ago
- C implementation of the Landau-Vishkin algorithm☆35Apr 8, 2022Updated 3 years ago
- Implicit Interval Tree with Interpolation Index☆42Jul 13, 2022Updated 3 years ago
- This repo is deprecated. Please use gfatools instead.☆15Aug 17, 2018Updated 7 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 5 years ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- ECML16: GaKCo: a Fast Gapped k-mer string Kernel using Counting☆14Aug 28, 2019Updated 6 years ago
- Port of PicoDexed to the Raspberry Pi Pico 2 (RP2350, ARM Cortex-M33 cores)