ocxtal / rbreadLinks
Header-only, gzread-like reader for gzip, bz2, and xz.
☆11Updated 7 years ago
Alternatives and similar repositories for rbread
Users that are interested in rbread are comparing it to the libraries listed below
Sorting:
- nimble aligner that will map your reads to the references on a laptop☆11Updated 8 years ago
- ☆24Updated last month
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- ☆28Updated 5 months ago
- Long Approximate Matches-based Split Aligner☆13Updated 8 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10Updated 4 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Updated 5 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- Utilities to detect and profile `het-kmers`☆11Updated last year
- ☆11Updated 2 years ago
- ☆24Updated 4 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- ☆13Updated 9 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- ☆14Updated 5 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 5 years ago
- De Bruijn graph representation in low memory☆35Updated last year
- ☆16Updated 3 years ago
- Detects human contamination in bam files☆16Updated 5 years ago
- An experimental tool to find approximate max-cuts in a large graph☆10Updated 4 years ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Updated 4 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- VariantStore: A Large-Scale Genomic Variant Search Index☆38Updated 4 years ago
- Pan-genome Seed Index☆20Updated 6 months ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- Long read to reference genome mapping tool☆13Updated last year