Alternatives and similar repositories for naivepca

Users that are interested in naivepca are comparing it to the libraries listed below

• DecodeGenetics / read_haps
  Detects human contamination in bam files
  ☆16Updated 4 years ago
• paudano / kestrel
  Mapping-free variant caller for short-read Illumina data
  ☆19Updated 5 years ago
• mreppell / Karp
  Accurate and fast taxonomic classification using pseudoaligning
  ☆21Updated 7 years ago
• jaudoux / kamix
  Index and query k-mer matrices in BGZF
  ☆12Updated 7 years ago
• mchaisso / mcutils
  ☆12Updated 2 months ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 8 months ago
• DRL / blobtools-light
  Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!
  ☆8Updated 9 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated last year
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• mklarqvist / djinn
  C++ library for analysing and storing large-scale cohorts of sequence variant data
  ☆17Updated 5 years ago
• dnanexus / IndexTools
  IndexTools is a toolkit for extremely fast NGS analysis based on index files.
  ☆17Updated 2 years ago
• nh13 / fqme
  ☆22Updated 6 months ago
• walaj / svlib
  Toolkit for extracting SVs from long sequences and benchmarking variant callers
  ☆13Updated 8 years ago
• poreathon / poreathon
  Pipeline for poreathon
  ☆14Updated 10 years ago
• Grice-Lab / AlignerBoost
  AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …
  ☆11Updated 3 years ago
• maxplanck-ie / TheWhoTheWhatTheHuh
  "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.
  ☆11Updated 2 years ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated 2 months ago
• xa6xa6 / metaOthello
  ☆16Updated 7 years ago
• uio-bmi / NucMerge
  Genome assembly quality improvement assisted by alternative assemblies and paired-end Illumina reads
  ☆7Updated 6 years ago
• Magdoll / CoSA
  Coronavirus (SARS-Cov-2) sequencing analysis
  ☆10Updated 3 years ago
• camillescott / shmlast
  blast, shmlast
  ☆22Updated 4 years ago
• jbelyeu / unfazed
  Unfazed by genomic variant phasing
  ☆26Updated last year
• bioinformatics-centre / AsmVar
  A software for discovery, genotyping and characterization of structural variants
  ☆22Updated 9 months ago
• usnistgov / pepr
  Pipeline for Evaluating Prokaryotic References
  ☆11Updated 8 years ago
• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated last year
• seqan / vaquita
  Identification of structural variations
  ☆12Updated 2 years ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated last year
• mskilab-org / pgv
  Pan gGnome Viewer
  ☆10Updated last year
• sfu-compbio / deez
  DeeNA Zip (SAM/BAM compression tool)
  ☆13Updated 6 years ago
• SchulzLab / ORNA
  Fast in-silico normalization algorithm for NGS data
  ☆23Updated 3 years ago