Naive PCA for genotype data
☆10Jul 27, 2016Updated 9 years ago
Alternatives and similar repositories for naivepca
Users that are interested in naivepca are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Demonstrating the PRoot program☆11Jul 29, 2016Updated 9 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Sep 4, 2019Updated 6 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Quantitative Trait Cluster Association Test in R☆26Apr 19, 2021Updated 4 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Nov 30, 2020Updated 5 years ago
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Jun 20, 2020Updated 5 years ago
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Sep 19, 2022Updated 3 years ago
- Mapping-free variant caller for short-read Illumina data☆20Apr 2, 2020Updated 5 years ago
- ☆21Oct 2, 2024Updated last year
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 3 years ago
- Phylo.IO JS tree viewer☆35Jan 21, 2026Updated 2 months ago
- Manipulate FASTA files☆29Aug 26, 2014Updated 11 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- scripts to parse IrysView output☆11Jun 24, 2015Updated 10 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- A tool to construct repeats directly from raw reads☆17May 29, 2021Updated 4 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Rcount: simple and flexible RNA-Seq read counting☆12May 19, 2022Updated 3 years ago
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Jan 7, 2022Updated 4 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- K-means clustering for large single-cell datasets☆12Feb 10, 2026Updated last month
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Toolkit for processing TAB-delimited format☆62Oct 10, 2024Updated last year
- High throughput sequencing analysis tools☆30Apr 21, 2025Updated 11 months ago
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Aug 20, 2020Updated 5 years ago
- genotype dimensionality reduction with a VAE☆48Mar 11, 2025Updated last year
- Small utility to quickly find size and GC content of a fasta file. Can also extract sequence. Who doesn't like QUICK and DIRTY!☆13Aug 27, 2018Updated 7 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- Estimate population history parameters from site pattern frequencies.☆12Dec 2, 2025Updated 3 months ago
- RNA-Skim: a rapid method for RNA-Seq quantification at transcript level☆19Sep 3, 2017Updated 8 years ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ziglang + htslib☆21Oct 31, 2021Updated 4 years ago
- Clin.iobio - Workflow and reporting for iobio variant analysis pipeline☆12Oct 7, 2025Updated 5 months ago
- ☆11Apr 3, 2023Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Oct 22, 2019Updated 6 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- CardiacProfileR: An R package for extraction and visualisation of heart rate profiles from wearable fitness trackers☆12Jun 10, 2018Updated 7 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago