Alternatives and similar repositories for naivepca

Users that are interested in naivepca are comparing it to the libraries listed below

• paudano / kestrel
  Mapping-free variant caller for short-read Illumina data
  ☆19Updated 5 years ago
• thegenemyers / DAMAPPER
  Long read to reference genome mapping tool
  ☆13Updated last year
• DReichLab / adna
  Processing WGS aDNA data using the ReichLab protocol
  ☆13Updated 6 years ago
• mchaisso / mcutils
  ☆12Updated 2 weeks ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 11 months ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated last month
• edawson / svaha
  Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
  ☆11Updated last year
• richarddurbin / hash10x
  a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly
  ☆15Updated 5 years ago
• seqan / vaquita
  Identification of structural variations
  ☆12Updated 3 years ago
• alshai / rowbowt
  run-length BWT tools for genomic sequences
  ☆19Updated 3 years ago
• mreppell / Karp
  Accurate and fast taxonomic classification using pseudoaligning
  ☆21Updated 8 years ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆15Updated 7 years ago
• DecodeGenetics / read_haps
  Detects human contamination in bam files
  ☆16Updated 5 years ago
• Malfoy / BCOOL
  de Bruijn graph cOrrectiOn from graph aLignment
  ☆11Updated 5 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated last year
• iqbal-lab / cortex
  reference free variant assembly
  ☆34Updated 2 years ago
• mklarqvist / djinn
  C++ library for analysing and storing large-scale cohorts of sequence variant data
  ☆17Updated 6 years ago
• pblischak / polyploid-genotyping
  SNP genotyping in polyploids
  ☆17Updated 5 years ago
• camillescott / shmlast
  blast, shmlast
  ☆21Updated 4 years ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated last year
• walaj / svlib
  Toolkit for extracting SVs from long sequences and benchmarking variant callers
  ☆13Updated 8 years ago
• mskilab-org / pgv
  Pan gGnome Viewer
  ☆10Updated 2 months ago
• KiddLab / QuicK-mer2
  ☆11Updated 2 years ago
• ksahlin / BESST_RNA
  Scaffolding of genomic assemblies with RNA seq data
  ☆15Updated 9 years ago
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated last month
• medvedevgroup / vargeno
  Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
  ☆21Updated 6 years ago
• COMBINE-lab / shoal
  Improved multi-sample transcript abundance estimates using adaptive priors
  ☆20Updated 6 years ago
• jaudoux / kamix
  Index and query k-mer matrices in BGZF
  ☆12Updated 7 years ago