bioinformatics-centre / AsmVarLinks
A software for discovery, genotyping and characterization of structural variants
☆22Updated 9 months ago
Alternatives and similar repositories for AsmVar
Users that are interested in AsmVar are comparing it to the libraries listed below
Sorting:
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Updated 4 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- ☆30Updated 5 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- ☆14Updated last year
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Updated 6 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- Tumour-only somatic mutation calling using long reads☆27Updated 7 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- ☆16Updated 5 months ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- ☆34Updated 5 years ago
- Convert HAL to VG☆22Updated 10 months ago
- ☆16Updated 3 years ago