PSI-Lab / HiCSR
HiCSR: a Hi-C super-resolution framework for producing highly realistic contact maps
☆15Updated 2 years ago
Alternatives and similar repositories for HiCSR:
Users that are interested in HiCSR are comparing it to the libraries listed below
- A GAN-based method for Enhancing Hi-C data☆31Updated 4 years ago
- Scripts + resources for analyzing combinatorial Hi-C data☆30Updated 5 years ago
- Single-cell Hi-C data analysis toolbox☆26Updated 3 years ago
- Python library for processing and visualizing Hi-C data☆20Updated 4 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated 2 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated last year
- Particle dynamics and simulated annealing for chromosome structure calculation☆29Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆42Updated 2 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 6 years ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 3 years ago
- ☆18Updated 3 years ago
- HiC for copy Number variation and Translocation detection☆38Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆31Updated 3 weeks ago
- Lightweight converter between hic and cool contact matrices.☆71Updated 9 months ago
- a computational tool for analyzing single cell Hi-C data☆25Updated last year
- Genome-wide contact analysis using sklearn☆64Updated last year
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆11Updated 3 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated 3 weeks ago
- snakemake pipeline for Hi-C post-processing☆22Updated 10 months ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated last year
- Versatile FASTA/FASTQ demultiplexer.☆33Updated 10 months ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 3 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆15Updated this week
- ☆31Updated 5 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 2 months ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Updated last year