HiCSR: a Hi-C super-resolution framework for producing highly realistic contact maps
☆15Nov 22, 2022Updated 3 years ago
Alternatives and similar repositories for HiCSR
Users that are interested in HiCSR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A GAN-based method for Enhancing Hi-C data☆33Dec 17, 2020Updated 5 years ago
- ☆13Jul 21, 2021Updated 4 years ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- ☆12Dec 21, 2021Updated 4 years ago
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Snakemake workflow for comparing E-G links to experimental data☆24May 27, 2026Updated 2 weeks ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆82Oct 31, 2024Updated last year
- Software for error-tolerant coding of information into DNA sequences using finite-state transducers.☆12Jan 8, 2017Updated 9 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆52Apr 12, 2019Updated 7 years ago
- We developed a protocol of in situ high throughput multi-way contact long read Pore-C sequencing (in situ HiPore-C), a strategy that inte…☆23Mar 17, 2024Updated 2 years ago
- ☆32Sep 28, 2019Updated 6 years ago
- Cooler demo using a Jupyter notebook Binder☆19Sep 24, 2020Updated 5 years ago
- A flexible python program for generating figures from regions of the genome.☆13Apr 6, 2019Updated 7 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆42Jan 31, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Jul 13, 2021Updated 4 years ago
- Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research☆15Nov 29, 2021Updated 4 years ago
- ☆24Aug 21, 2019Updated 6 years ago
- A Boolean Algebra for Genetic Variants☆14Updated this week
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Aug 7, 2018Updated 7 years ago
- convert from HDF5 matrix format to txt/tab (tsv) matrix format☆10Aug 3, 2016Updated 9 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆37Aug 28, 2015Updated 10 years ago
- SIP: Significant Interaction Peak caller☆17Apr 24, 2025Updated last year
- ziglang + htslib☆22Oct 31, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Gene copy number prediction from k-mer frequencies☆17Apr 15, 2026Updated last month
- High-fidelity 5mC DNA methylation detection model for PacBio HiFi reads☆13Apr 10, 2026Updated 2 months ago
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆17Oct 12, 2018Updated 7 years ago
- ☆20Jan 1, 2022Updated 4 years ago
- Single-cell Hi-C data analysis toolbox☆28Aug 13, 2021Updated 4 years ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆99Mar 1, 2025Updated last year
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆86Mar 22, 2026Updated 2 months ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆29Sep 26, 2024Updated last year
- evaluating vcf parsing libraries☆19Mar 1, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- FAN-C: Framework for the ANalysis of C-like data☆121Mar 13, 2024Updated 2 years ago
- ☆39Feb 22, 2023Updated 3 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- (check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-qualit…☆15Nov 22, 2022Updated 3 years ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆439Mar 28, 2024Updated 2 years ago
- code to run sei and obtain sei and sequence class predictions☆115Dec 20, 2022Updated 3 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆28May 20, 2026Updated 3 weeks ago