PSI-Lab / HiCSRLinks
HiCSR: a Hi-C super-resolution framework for producing highly realistic contact maps
☆15Updated 2 years ago
Alternatives and similar repositories for HiCSR
Users that are interested in HiCSR are comparing it to the libraries listed below
Sorting:
- A GAN-based method for Enhancing Hi-C data☆33Updated 4 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 2 years ago
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 3 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated 3 months ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- Interactive multiscale visualization for structural variation in human genomes☆70Updated this week
- ☆15Updated 3 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆11Updated 4 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆69Updated 4 months ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Updated 2 years ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆53Updated 4 months ago
- Lightweight converter between hic and cool contact matrices.☆73Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 10 months ago
- Blazing fast toolkit to work with .hic and .cool files☆31Updated this week
- for visual evaluation of read support for structural variation☆54Updated last year
- ☆39Updated 2 weeks ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆36Updated 11 months ago
- Genome-wide contact analysis using sklearn☆68Updated last year
- Particle dynamics and simulated annealing for chromosome structure calculation☆29Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 2 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆50Updated 7 years ago