PSI-Lab / HiCSRLinks
HiCSR: a Hi-C super-resolution framework for producing highly realistic contact maps
☆15Updated 3 years ago
Alternatives and similar repositories for HiCSR
Users that are interested in HiCSR are comparing it to the libraries listed below
Sorting:
- A GAN-based method for Enhancing Hi-C data☆32Updated 5 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 3 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆28Updated last year
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆40Updated last year
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 3 years ago
- Scripts + resources for analyzing combinatorial Hi-C data☆31Updated 6 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆29Updated 8 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆34Updated 8 months ago
- ☆19Updated 3 years ago
- ☆40Updated 5 months ago
- a computational tool for analyzing single cell Hi-C data☆26Updated last year
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆70Updated 10 months ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Updated 4 years ago
- Architectural stripe detection from 3D genome conformation data☆18Updated 3 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆56Updated 7 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆52Updated 8 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 7 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Updated 2 years ago
- Extract data quickly from Juicebox via straw☆69Updated 8 months ago
- ☆30Updated last year
- IDR☆31Updated 2 years ago
- Detecting Regulatory Elements using GRO-seq and PRO-seq☆40Updated 7 months ago