☆28Sep 28, 2024Updated last year
Alternatives and similar repositories for 2022-pangenome-graphs-intro
Users that are interested in 2022-pangenome-graphs-intro are comparing it to the libraries listed below
Sorting:
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 2 years ago
- ☆18May 10, 2023Updated 2 years ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 4 years ago
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Dec 24, 2021Updated 4 years ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated last month
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated 11 months ago
- Parallel Sequence to Graph Alignment☆36Nov 26, 2022Updated 3 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- ☆29Aug 7, 2025Updated 7 months ago
- assembly evaluation tool☆35May 11, 2022Updated 3 years ago
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- ☆15Mar 9, 2018Updated 8 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 9 months ago
- GFA visualizer, GPU-accelerated using Vulkan☆76Aug 2, 2022Updated 3 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- ☆28Apr 9, 2025Updated 11 months ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 4 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56May 29, 2024Updated last year
- ☆17Jan 5, 2021Updated 5 years ago
- Pan-genome inference and genotyping with long noisy or short accurate reads☆119Dec 13, 2024Updated last year
- A tool for removing redundant genomes from a set of assemblies☆79Sep 10, 2025Updated 6 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 7 months ago
- ☆41Feb 15, 2026Updated 3 weeks ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 9 months ago
- Optimized sequence graph implementations for graph genomics☆34Feb 27, 2026Updated last week
- PGR-TK: Pangenome Research Tool Kit☆21Mar 13, 2025Updated 11 months ago
- Pan-genome Seed Index☆20Mar 12, 2025Updated 11 months ago
- Statistics and analysis for variation graphs☆49Dec 17, 2024Updated last year
- ☆32Dec 16, 2022Updated 3 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 6 years ago
- ☆11Aug 2, 2025Updated 7 months ago
- a GFA toolkit☆13Oct 4, 2024Updated last year
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 5 years ago
- extract MSAs from genome variation graphs☆34Mar 3, 2026Updated last week