Alternatives and similar repositories for GiniClust3

Users that are interested in GiniClust3 are comparing it to the libraries listed below

• statgen / popscle
  A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…
  ☆57Updated 4 years ago
• McGranahanLab / TcellExTRECT
  ☆47Updated 10 months ago
• ggjlab / scHCL
  ☆47Updated 5 years ago
• lanagarmire / SSrGE
  ☆34Updated 6 years ago
• r3fang / snATAC
  <<------ Use SnapATAC!!
  ☆26Updated 6 years ago
• nghiavtr / SCmut
  ☆34Updated 6 years ago
• huangyh09 / brie
  BRIE: Bayesian Regression for Isoform Estimate in Single Cells
  ☆42Updated last year
• hemberg-lab / scfind
  ☆43Updated 2 years ago
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆42Updated 2 months ago
• qinqian / lisa
  epigenome analysis to rank transcription factors
  ☆31Updated 2 years ago
• rargelaguet / scnmt_gastrulation
  scNMT-seq gastrulation
  ☆42Updated 2 years ago
• cole-trapnell-lab / cicero-release
  ☆59Updated last year
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆86Updated 6 months ago
• GreenleafLab / chromVARmotifs
  R package with motifs for use with chromVAR
  ☆28Updated 8 years ago
• dan-landau / IronThrone-GoT
  processes GoT amplicon data and generates a table of metrics
  ☆32Updated 3 years ago
• broadinstitute / RNA_MUTECT_1.0-1
  ☆39Updated 5 years ago
• DavisLaboratory / vissE
  An R/Bioconductor package to identify higher-order molecular phenotypes
  ☆19Updated last year
• lhqing / ALLCools
  Toolkit for single-cell DNA methylation analysis.
  ☆43Updated last week
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 5 years ago
• wenweixiong / MARVEL
  ☆51Updated last year
• tanlabcode / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆24Updated last year
• humengying0907 / InstaPrism
  InstaPrism is an R package for fast implementation of BayesPrism
  ☆45Updated last year
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆31Updated 4 years ago
• wbaopaul / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆79Updated 8 months ago
• QuKunLab / APEC
  Single cell epigenomic clustering based on accessibility pattern
  ☆23Updated 3 years ago
• sandberg-lab / txburst
  Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Lars…
  ☆39Updated last year
• neurorestore / DE-analysis
  ☆39Updated 4 years ago
• dpeerlab / Harmony
  Harmony framework for connecting scRNA-seq data from discrete time points
  ☆51Updated last year
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆81Updated 3 years ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆45Updated 5 years ago