aristoteleo / dynast-releaseLinks
Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments
☆17Updated last year
Alternatives and similar repositories for dynast-release
Users that are interested in dynast-release are comparing it to the libraries listed below
Sorting:
- R package for metabolic enzyme enrichment anaylsis☆12Updated 8 months ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Updated 4 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Updated 2 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆15Updated 2 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆59Updated last year
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- ☆27Updated last year
- GRiNCH: Graph-Regularized NMF and Clustering for Hi-C☆9Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 10 months ago
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Updated last year
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆12Updated last year
- Code and analysis pipeline for NASC-seq.☆11Updated 3 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- ☆23Updated 6 months ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 8 months ago
- INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads☆18Updated last year
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated 3 months ago
- Caching extension for Scanpy☆8Updated 4 years ago
- Network construction Algorithm☆22Updated 10 months ago
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆17Updated 2 years ago
- ☆27Updated 9 months ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆13Updated 2 years ago