aristoteleo / dynast-release
Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments
β14Updated last year
Related projects β
Alternatives and complementary repositories for dynast-release
- 𧬠π¦ A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.β¦β24Updated 3 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologiesβ25Updated 10 months ago
- epigenome analysis to rank transcription factorsβ13Updated 4 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decompositionβ17Updated last year
- Dynamical systems methods for RNA velocity analysisβ23Updated 3 years ago
- Regulatory networks with Direct Informationβ16Updated 5 years ago
- β16Updated last month
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"β12Updated 4 years ago
- Benchmarking long-read RNA-seq analysis toolsβ25Updated 9 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous dataβ20Updated 7 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.β27Updated 2 months ago
- Code associated with MIX-seq manuscriptβ14Updated 4 years ago
- Code and analysis pipeline for NASC-seq.β11Updated 2 years ago
- A single-cell and spatial RNA-seq database for Alzheimerβs Diseaseβ19Updated 3 months ago
- Regulatory networks with Direct Information in pythonβ38Updated last year
- Multi-study integration of cellular trajectoriesβ18Updated 4 years ago
- Single-cell Hi-C data analysis toolboxβ24Updated 3 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seqβ11Updated last year
- Dynamic models for single-cell RNA-seq time series.β39Updated 6 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batchβ¦β34Updated 2 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C dataβ29Updated last year
- GENIE3 (GEne Network Inference with Ensemble of trees) R-packageβ27Updated 2 years ago
- β25Updated 3 years ago
- RNA velocity validationβ23Updated 2 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression dataβ22Updated 3 years ago
- Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)β10Updated 3 years ago
- scOpen: single-cell open chromatin analysis via NMF modellingβ25Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq dataβ24Updated last year
- Fast motif matching in Rβ43Updated 9 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profilesβ27Updated 4 years ago