caleblareau / singlecell_bloodtraitsLinks
Data/analysis repository for "Interrogation of human hematopoiesis..." paper
☆20Updated 6 years ago
Alternatives and similar repositories for singlecell_bloodtraits
Users that are interested in singlecell_bloodtraits are comparing it to the libraries listed below
Sorting:
- ATAC-seq processing pipeline☆34Updated 3 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- An R package to time somatic mutations☆64Updated 4 years ago
- ☆17Updated 6 years ago
- Scripts to recreate figures from the SC3 paper☆40Updated 8 years ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- ☆47Updated 9 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆80Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 9 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆60Updated last month
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 7 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- ☆28Updated 4 years ago
- RNA editing tests☆17Updated 5 years ago
- snakemake workflow for post-processing scATACseq data☆22Updated 5 years ago
- ☆34Updated 6 years ago
- Single Cell Analysis Automated Workflow☆28Updated 2 years ago
- ☆39Updated 5 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆23Updated 3 years ago
- Enhanced version of the FastQTL QTL mapper☆70Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- Links to ATAC-seq analysis tools☆71Updated 4 years ago