algo-cancer / CAMMiQ
Metagenomics microbial abundance quantification
☆27Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for CAMMiQ
- OPAL: Open-community Profiling Assessment tooL☆27Updated 3 months ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- ☆30Updated last year
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 7 months ago
- catalog for long-read sequencing tools☆32Updated last year
- Find Unique genomic Regions☆29Updated this week
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- Set of utilities on sequences and BAM files☆25Updated 3 years ago
- Generate unique KMERs for every contig in a FASTA file☆43Updated 2 years ago
- Pan-Genomic Matching Statistics☆48Updated 7 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 9 months ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆17Updated 2 months ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- ☆21Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- Microbial agile accurate SNP Typer☆29Updated 10 months ago
- A reference viral database (RVDB)☆26Updated 5 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- Remove lambda phage reads from a fastq file☆28Updated last year
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Accurate metagenomi/metatranscriptomic analysis pipeline☆22Updated 3 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- MIRA sequence assembler☆27Updated 5 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 3 weeks ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 2 years ago