algo-cancer / CAMMiQLinks
Metagenomics microbial abundance quantification
☆28Updated 3 years ago
Alternatives and similar repositories for CAMMiQ
Users that are interested in CAMMiQ are comparing it to the libraries listed below
Sorting:
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 10 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated 5 months ago
- Automatically design multiplex PCR primer pairs for diverse templates☆30Updated last year
- ☆13Updated last year
- Pan-Genomic Matching Statistics☆54Updated last year
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated 2 weeks ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last week
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- Count kmers with a more efficient (faster) hash table☆23Updated last year
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data☆20Updated 3 years ago
- ☆36Updated last year
- catalog for long-read sequencing tools☆32Updated 2 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 4 months ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆31Updated last year
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆37Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Updated last year
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 11 months ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- Find Unique genomic Regions☆32Updated 3 weeks ago
- A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes☆51Updated 10 months ago