algo-cancer / CAMMiQLinks
Metagenomics microbial abundance quantification
☆27Updated 3 years ago
Alternatives and similar repositories for CAMMiQ
Users that are interested in CAMMiQ are comparing it to the libraries listed below
Sorting:
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Pan-Genomic Matching Statistics☆53Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated 3 months ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 8 months ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆32Updated 10 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- ☆30Updated 4 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 2 months ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Long-read splice alignment with high accuracy☆63Updated 11 months ago
- convert a blast output to a bed file☆12Updated 10 years ago
- Count kmers with a more efficient (faster) hash table☆23Updated last year
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated 2 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data☆20Updated 3 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 6 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆45Updated 2 weeks ago
- ☆21Updated 5 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 5 months ago
- The shiny app that accompanies the ngsReports R package☆14Updated 4 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆50Updated 6 months ago