☆27Aug 9, 2019Updated 6 years ago
Alternatives and similar repositories for FiRE
Users that are interested in FiRE are comparing it to the libraries listed below
Sorting:
- ☆11Jan 7, 2020Updated 6 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- Identifying cell subpopulational differences among single-cell biospecimens☆15Sep 27, 2024Updated last year
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 5 years ago
- Single Cell RNA-seq UMI Filtering Facilitator☆10Oct 6, 2025Updated 4 months ago
- ☆27Sep 2, 2021Updated 4 years ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Aug 30, 2018Updated 7 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- Human embryonic cell altas☆13Dec 31, 2019Updated 6 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Jun 22, 2022Updated 3 years ago
- ☆15Jun 17, 2021Updated 4 years ago
- 🍊🔬 Orange add-on for gene expression of single cell data☆17Updated this week
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- Version 2.1.0 released☆23Sep 16, 2019Updated 6 years ago
- metadata and data from the database☆42Jan 29, 2020Updated 6 years ago
- ☆19Jul 8, 2021Updated 4 years ago
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 3 years ago
- SemI-SUpervised generative Autoencoder models for single cell data☆18Mar 30, 2021Updated 4 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 5 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆20Jan 17, 2023Updated 3 years ago
- Annotated multivariate observation data in R☆52Jun 3, 2025Updated 9 months ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- Single-cell Orientation Tracing☆22Jan 23, 2022Updated 4 years ago
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆95Jul 23, 2024Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Jan 9, 2021Updated 5 years ago
- Deep learning for single-cell transcript counts☆90Mar 14, 2025Updated 11 months ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆62Feb 26, 2026Updated last week
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆61Aug 30, 2022Updated 3 years ago
- ☆48Jun 21, 2019Updated 6 years ago
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 2 years ago
- Single-cell Scalable Visualization and Analytics☆27Mar 26, 2019Updated 6 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58May 5, 2021Updated 4 years ago
- Information-based dimensionality reduction☆29Dec 14, 2024Updated last year
- R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)☆22Aug 28, 2019Updated 6 years ago
- Big data Regression for predicting DNase I hypersensitivity☆31Aug 27, 2024Updated last year
- Representation Learning for detection of phenotype-associated cell subsets☆66Oct 24, 2020Updated 5 years ago
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆26Jun 7, 2025Updated 8 months ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆109Jul 3, 2023Updated 2 years ago