☆27Aug 9, 2019Updated 6 years ago
Alternatives and similar repositories for FiRE
Users that are interested in FiRE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Jan 7, 2020Updated 6 years ago
- Single Cell RNA-seq UMI Filtering Facilitator☆10Oct 6, 2025Updated 6 months ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- 🍊🔬 Orange add-on for gene expression of single cell data☆17Mar 3, 2026Updated last month
- Rare cell identification tool for single cell datasets☆22Jun 14, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 5 years ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Aug 30, 2018Updated 7 years ago
- ☆27Sep 2, 2021Updated 4 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Jun 22, 2022Updated 3 years ago
- Snakemake pipeline for the preprocessing, alignment, QC, and quantification of spatial transcriptomics data - both short-read and long-re…☆11Mar 13, 2026Updated last month
- Version 2.1.0 released☆23Sep 16, 2019Updated 6 years ago
- Identifying cell subpopulational differences among single-cell biospecimens☆16Sep 27, 2024Updated last year
- Human embryonic cell altas☆13Dec 31, 2019Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆13Jun 21, 2024Updated last year
- metadata and data from the database☆42Jan 29, 2020Updated 6 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆61Aug 30, 2022Updated 3 years ago
- ☆15Jun 17, 2021Updated 4 years ago
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆95Jul 23, 2024Updated last year
- R package for benchmarking single cell analysis methods☆32Oct 4, 2023Updated 2 years ago
- R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)☆22Aug 28, 2019Updated 6 years ago
- Representation Learning for detection of phenotype-associated cell subsets☆66Oct 24, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆10Dec 14, 2016Updated 9 years ago
- ☆19Jul 8, 2021Updated 4 years ago
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 3 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Feb 25, 2024Updated 2 years ago
- Proteome Generator☆10Apr 18, 2019Updated 6 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 5 years ago
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- barcode demultiplexing☆22Jun 4, 2019Updated 6 years ago
- SCOUP is a probabilistic model to analyze single-cell expression data during differentiation☆10Apr 20, 2017Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- What the Package Does (One Line, Title Case)☆13May 16, 2018Updated 7 years ago
- Deep learning for single-cell transcript counts☆90Mar 14, 2025Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Jan 9, 2021Updated 5 years ago
- ☆48Jun 21, 2019Updated 6 years ago
- A scraping and aggregating package using the CollegeFootballData API☆11Dec 11, 2020Updated 5 years ago
- Annotated multivariate observation data in R☆53Apr 1, 2026Updated 2 weeks ago