minmarg / comer2Links
Fast, sensitive and accurate protein remote homology search on GPUs
☆16Updated last year
Alternatives and similar repositories for comer2
Users that are interested in comer2 are comparing it to the libraries listed below
Sorting:
- MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences☆15Updated 3 years ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆13Updated 2 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Protein Sequence Annotation with Language Models☆25Updated 6 months ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆20Updated last year
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Updated 2 years ago
- Plot multiple sequence alignment (MSA)☆15Updated last year
- FASSO: Functional Annotations using Sequence and Structure Orthology☆10Updated 2 years ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆34Updated 2 years ago
- Map genetic variants and protein positions to protein interfaces in 3D☆13Updated 2 years ago
- antimicrobial peptide prediction in R☆33Updated 11 months ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆29Updated 10 months ago
- Associated code for EvoWeaver publication☆16Updated 6 months ago
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆13Updated 6 years ago
- Package that facilitates pulling database entries from KEGG via its REST API☆11Updated 2 years ago
- Evolcust retrieves groups of genes that appear clustered together in groups of species☆16Updated 3 years ago
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆18Updated 8 months ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆36Updated last month
- ☆27Updated 2 months ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Updated 2 years ago
- Deep learning embedding for nucleotide sequences☆19Updated 8 months ago
- Learning and Aligning Large Protein Families with support of protein language models.☆28Updated this week
- Prediction of virus-host association using protein language models and multiple instance learning☆20Updated last year
- Sequence analysis library used by Eddy/Rivas lab code☆49Updated 2 months ago
- ORFFinder in Python☆15Updated last year
- Generation and updating of protein families☆21Updated this week
- Nanopore UMI-linked consensus sequencing☆16Updated 4 years ago
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆15Updated 4 years ago
- Chorus: Heterogeneous GPU+CPU Multiple Protein Sequences Alignment Search for Large Database☆16Updated 7 months ago