minmarg / comer2
Fast, sensitive and accurate protein remote homology search on GPUs
☆15Updated last year
Alternatives and similar repositories for comer2:
Users that are interested in comer2 are comparing it to the libraries listed below
- ☆17Updated 10 months ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Updated 2 years ago
- Map genetic variants and protein positions to protein interfaces in 3D☆13Updated last year
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆24Updated 2 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆19Updated last year
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆9Updated 3 months ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- Protein Sequence Annotation with Language Models☆20Updated 6 months ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆21Updated 11 months ago
- scripts for parsing PDB, fasta, and GO☆15Updated 3 years ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆13Updated 3 months ago
- Learning and Aligning Large Protein Families with support of protein language models.☆23Updated this week
- Prediction of virus-host association using protein language models and multiple instance learning☆17Updated 10 months ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- ☆34Updated 8 months ago
- Code for LazyAF pipeline☆20Updated last year
- Package that facilitates pulling database entries from KEGG via its REST API☆9Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆29Updated last year
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Updated 3 years ago
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Updated last year
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆20Updated 10 months ago
- Plot multiple sequence alignment (MSA)☆14Updated 7 months ago
- DeepECtransformer☆24Updated last year
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated last month
- ☆17Updated 11 months ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆31Updated 2 months ago
- MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences☆14Updated 3 years ago
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆55Updated 3 weeks ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆12Updated 2 years ago