iancovert / persist
☆14Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for persist
- Nonnegative spatial factorization for multivariate count data☆56Updated last year
- ☆37Updated 3 weeks ago
- Bayesian Analytics for Spatial Segmentation☆21Updated last month
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆21Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆31Updated 6 months ago
- SPatial INtegration of spatially resolved transcriptomics datasets☆14Updated last month
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆38Updated 3 years ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆25Updated last year
- ☆12Updated 2 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆24Updated last month
- Spatial direct messaging detected by bivariate Moran☆24Updated 6 months ago
- ☆32Updated this week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆49Updated last week
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆28Updated 4 months ago
- ☆29Updated last year
- ☆19Updated 2 years ago
- CAST package☆23Updated 2 weeks ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆68Updated 10 months ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆20Updated 2 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆36Updated 2 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆27Updated 4 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆28Updated 10 months ago
- Code used to benchmark Xenium☆40Updated 4 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆44Updated 4 months ago
- ☆44Updated last year
- ☆48Updated 3 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- SPROD: Spatial expression profiling de-noising☆33Updated last year
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆32Updated last year
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆20Updated last year