iancovert / persist
☆15Updated 7 months ago
Alternatives and similar repositories for persist:
Users that are interested in persist are comparing it to the libraries listed below
- CAST package☆32Updated 4 months ago
- ☆42Updated 3 months ago
- Spatial direct messaging detected by bivariate Moran☆25Updated 2 months ago
- SPatial INtegration of spatially resolved transcriptomics datasets☆15Updated last week
- ☆45Updated last week
- Bayesian Analytics for Spatial Segmentation☆25Updated 5 months ago
- ☆33Updated last year
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 6 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆25Updated 8 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆51Updated 2 weeks ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆46Updated last month
- Nonnegative spatial factorization for multivariate count data☆57Updated last year
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆33Updated last week
- ☆14Updated last year
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆44Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆34Updated last month
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- ☆20Updated last month
- Code used to benchmark Xenium☆51Updated 8 months ago
- ☆31Updated 7 months ago
- ☆12Updated 2 years ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆31Updated last month
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- https://sparrow-pipeline.readthedocs.io/en/latest/☆26Updated 3 weeks ago
- Web application demonstrating 3D modeling of spatial transcriptomics☆18Updated 3 months ago
- A set of files to do genomics analysis on python☆18Updated 3 months ago
- Multi-resolution Variational Inference☆22Updated 3 weeks ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆40Updated 3 years ago