willtownes / scrna2019Links
supporting code for the multinomial single cell RNA-Seq paper
☆52Updated 4 years ago
Alternatives and similar repositories for scrna2019
Users that are interested in scrna2019 are comparing it to the libraries listed below
Sorting:
- Normalize CITEseq Data☆66Updated 4 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- ☆55Updated 4 years ago
- ☆41Updated 4 years ago
- ☆59Updated 11 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆84Updated 11 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆56Updated 4 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- ☆55Updated 6 months ago
- ☆35Updated 5 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- Multi-sample Unified Discriminant ANalysis☆73Updated 2 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Clone of the Bioconductor repository for the scran package.☆43Updated 11 months ago
- An R toolkit for estimation of cell composition from bulk expression data☆77Updated 2 months ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- ☆28Updated 6 years ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆78Updated 3 months ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆45Updated 9 months ago
- ☆41Updated 2 months ago
- post-clustering differential expression test☆35Updated 6 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 9 years ago
- ☆47Updated 3 years ago
- R package of colors for the Buenrostro Lab☆84Updated last year
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year