willtownes / scrna2019View external linksLinks
supporting code for the multinomial single cell RNA-Seq paper
☆53Jan 6, 2021Updated 5 years ago
Alternatives and similar repositories for scrna2019
Users that are interested in scrna2019 are comparing it to the libraries listed below
Sorting:
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated last year
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 5 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆22Jul 10, 2024Updated last year
- ☆48Jun 21, 2019Updated 6 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Jul 5, 2019Updated 6 years ago
- ☆13Nov 13, 2018Updated 7 years ago
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Jun 8, 2021Updated 4 years ago
- Collection of useful methods for single cell analysis☆15Aug 22, 2024Updated last year
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆218Feb 26, 2024Updated last year
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆18Mar 27, 2021Updated 4 years ago
- An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis☆27Jan 27, 2021Updated 5 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆175Jun 10, 2024Updated last year
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆143Apr 5, 2024Updated last year
- Multi-sample Unified Discriminant ANalysis☆75Apr 11, 2023Updated 2 years ago
- 📝 [Tutorial] RepSeq data mining basics in R☆11Mar 13, 2019Updated 6 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆87Sep 17, 2025Updated 4 months ago
- ☆75Feb 4, 2024Updated 2 years ago
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 3 years ago
- Marker Selection by matching manifolds and elastic net☆23Oct 22, 2024Updated last year
- Single Cell RNA-seq UMI Filtering Facilitator☆10Oct 6, 2025Updated 4 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆113Oct 31, 2025Updated 3 months ago
- Supplementary files for paper "Detection and removal of barcode swapping in single-cell RNAseq".☆11Jul 5, 2018Updated 7 years ago
- A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v…☆32Sep 14, 2020Updated 5 years ago
- Clustering cells from single cell RNA seq assays☆46Nov 19, 2018Updated 7 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 5 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Jun 14, 2022Updated 3 years ago
- Geometry-preserving random sampling☆96Oct 29, 2024Updated last year
- Rare cell identification tool for single cell datasets☆22Jun 14, 2022Updated 3 years ago
- ☆29Feb 1, 2023Updated 3 years ago
- COMET Single-Cell Marker Detection tool☆32Jun 21, 2022Updated 3 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆105Nov 22, 2022Updated 3 years ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11May 5, 2020Updated 5 years ago
- ☆12Jul 6, 2023Updated 2 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆12Nov 14, 2020Updated 5 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago