willtownes / scrna2019Links
supporting code for the multinomial single cell RNA-Seq paper
☆53Updated 4 years ago
Alternatives and similar repositories for scrna2019
Users that are interested in scrna2019 are comparing it to the libraries listed below
Sorting:
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Clone identification from single-cell data☆61Updated 3 years ago
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- Normalize CITEseq Data☆66Updated last month
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated 3 weeks ago
- ☆59Updated last year
- ☆55Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- ☆55Updated 10 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆46Updated 9 years ago
- Clone of the Bioconductor repository for the scran package.☆45Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- R package of colors for the Buenrostro Lab☆86Updated last year
- ☆43Updated 4 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- ☆45Updated 3 weeks ago
- Clone of the Bioconductor repository for the batchelor package.☆18Updated 9 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- ☆23Updated 6 years ago
- ☆37Updated 9 months ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- ☆28Updated 6 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆78Updated 3 weeks ago
- An R-based interface for loom files☆67Updated 5 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago