willtownes / scrna2019Links
supporting code for the multinomial single cell RNA-Seq paper
☆52Updated 4 years ago
Alternatives and similar repositories for scrna2019
Users that are interested in scrna2019 are comparing it to the libraries listed below
Sorting:
- Normalize CITEseq Data☆66Updated 5 months ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- ☆55Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Clone of the Bioconductor repository for the scran package.☆43Updated last year
- ☆42Updated 4 years ago
- ☆28Updated 6 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- ☆59Updated last year
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- ☆35Updated 6 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- ☆42Updated 3 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆42Updated 3 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- ☆55Updated 6 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆45Updated 9 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- R package for specialised analysis of single cell data☆39Updated 2 years ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆78Updated 4 months ago
- Identify and correct invalid gene symbols☆59Updated 9 months ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year