willtownes / scrna2019
supporting code for the multinomial single cell RNA-Seq paper
☆51Updated 3 years ago
Related projects: ⓘ
- Clone identification from single-cell data☆57Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- scNMT-seq gastrulation☆41Updated last year
- ☆28Updated 6 months ago
- ☆36Updated 3 years ago
- ☆29Updated 5 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆40Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆36Updated 2 years ago
- Clone of the Bioconductor repository for the scran package.☆40Updated 2 weeks ago
- ConsensusTME Gene Sets and R Script☆38Updated 3 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- ☆29Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆49Updated last year
- ☆34Updated 4 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 3 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆45Updated 4 years ago
- ☆53Updated 3 years ago
- post-clustering differential expression test☆35Updated 5 years ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆28Updated 5 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆57Updated 2 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆42Updated 5 months ago
- Single Cell Analysis of Five'Ends☆43Updated 6 months ago
- R package for specialised analysis of single cell data☆35Updated last year
- Multi-sample Unified Discriminant ANalysis☆70Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆43Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 4 years ago
- Latent Embedding Multivariate Regression☆80Updated 3 weeks ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆19Updated last year
- Capybara: A computational tool to measure cell identity and fate transitions☆56Updated 2 years ago