willtownes / scrna2019
supporting code for the multinomial single cell RNA-Seq paper
☆51Updated 4 years ago
Alternatives and similar repositories for scrna2019:
Users that are interested in scrna2019 are comparing it to the libraries listed below
- ☆53Updated 4 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- Clone of the Bioconductor repository for the scran package.☆41Updated 5 months ago
- ☆28Updated 6 years ago
- ☆35Updated 11 months ago
- ☆38Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆71Updated 4 years ago
- ☆53Updated this week
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Normalize CITEseq Data☆65Updated 8 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆70Updated 9 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated 10 months ago
- ConsensusTME Gene Sets and R Script☆39Updated 8 months ago
- Cell type pipes for R☆51Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆44Updated last year
- ☆34Updated 9 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- R package for specialised analysis of single cell data☆37Updated 2 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Toolkit for Single-Cell Velocity☆54Updated last month
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆36Updated 2 years ago
- Linear trajectory inference for single-cell RNA-seq☆59Updated 10 months ago
- An r package that works as a wrapper to homologene☆42Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆46Updated 3 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated 11 months ago