This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequencing".
☆12Mar 13, 2020Updated 6 years ago
Alternatives and similar repositories for benchmarking_error_correction
Users that are interested in benchmarking_error_correction are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Feb 14, 2023Updated 3 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- CARE: Context-Aware Read Error correction for Illumina reads☆21Nov 1, 2023Updated 2 years ago
- ☆14Sep 18, 2018Updated 8 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Aug 17, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Ultra-fast, high-performing structural variation (SV) detector☆25Apr 26, 2023Updated 3 years ago
- ☆11May 21, 2024Updated 2 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files.☆10Jul 2, 2020Updated 6 years ago
- FQSqueezer - FASTQ compressor based on k-mer statistics☆18Feb 24, 2024Updated 2 years ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆67Oct 14, 2026Updated 2 weeks ago
- High-performance error correction for Illumina resequencing data☆75May 31, 2016Updated 10 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- The UltraPlexer is a kmer-based tool that allows assigning non-barcoded long-read sequences generated by the Oxford Nanopore Technology t…☆10Aug 16, 2021Updated 5 years ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆13Jul 11, 2026Updated 3 months ago
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 6 years ago
- ☆26Aug 10, 2021Updated 5 years ago
- A Python package with integrated lncRNA prediction methods☆13Feb 17, 2021Updated 5 years ago
- Illumina read substitution and indel error corrector. Processes human WGS 45x depth reads in about 4 hours, resulting in the reads qualit…☆10Sep 17, 2026Updated last month
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 4 years ago
- Find and visualize rearrangements in DNA sequences☆56Jun 3, 2026Updated 4 months ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- seqpac - A Framework for small RNA analysis in R using Sequence-Based Counts☆10Oct 12, 2026Updated 2 weeks ago
- ultrafast structural variation detection from circular consensus sequencing reads☆13Mar 8, 2022Updated 4 years ago
- ☆22Nov 21, 2016Updated 9 years ago
- analysis pipeline for CODEC data☆13Apr 22, 2026Updated 6 months ago
- The shiny app that accompanies the ngsReports R package☆14Jun 10, 2021Updated 5 years ago
- ☆19Apr 14, 2024Updated 2 years ago
- ☆29Dec 2, 2022Updated 3 years ago
- Next-generation sequencing analysis pipelines & scrips☆10Nov 25, 2020Updated 5 years ago
- ☆16Apr 25, 2017Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Fast, sensitive and accurate protein remote homology search on GPUs☆15May 6, 2024Updated 2 years ago
- ☆15Aug 1, 2021Updated 5 years ago
- Simplify snpEff annotations for interesting cases☆22Feb 18, 2019Updated 7 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆18Aug 5, 2021Updated 5 years ago
- ARBitR: Assembly Refinement with Barcode-identity-tagged Reads☆10Oct 22, 2020Updated 6 years ago
- Very large scale k-mer counting and analysis on Apache Spark.☆19Sep 30, 2026Updated last month