Mangul-Lab-USC / benchmarking_error_correction
This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequencing".
☆13Updated 4 years ago
Related projects: ⓘ
- ☆10Updated 2 years ago
- ☆21Updated 4 years ago
- ☆20Updated 9 months ago
- crab go snap snap☆28Updated 2 weeks ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆23Updated last year
- Tumour-only somatic mutation calling using long reads☆22Updated 6 months ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 4 years ago
- interactive Multi Objective K-mer Analysis☆23Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 4 years ago
- toolkit to process gtf files☆16Updated 2 years ago
- A long-read analysis toolbox for cancer and population genomics☆19Updated 6 months ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 6 years ago
- ☆11Updated 2 years ago
- Gapless, reference-quality Southern Han Chinese genome assembly and annotation☆11Updated last year
- Simultaneous multi-sample transcript assembler for RNA-seq data☆16Updated 2 years ago
- VNTR annotation using motif selection☆28Updated 3 weeks ago
- De novo construction of isoforms from long-read data☆15Updated last month
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 6 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆26Updated 3 years ago
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆18Updated last week
- Symmetric DUST for finding low-complexity regions in DNA sequences☆31Updated last year
- Tool for demultiplexing Nanopore barcode sequence data☆17Updated 3 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11Updated 4 years ago
- ☆15Updated 4 years ago
- ☆27Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆19Updated last year
- Convert HAL to VG☆21Updated last month
- Find Unique genomic Regions☆29Updated 2 weeks ago
- Metagenomics microbial abundance quantification☆27Updated last year