RitchieLabIGH / iMOKALinks
interactive Multi Objective K-mer Analysis
☆23Updated 2 years ago
Alternatives and similar repositories for iMOKA
Users that are interested in iMOKA are comparing it to the libraries listed below
Sorting:
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- ☆18Updated last year
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- ☆26Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- ☆16Updated 3 years ago
- ULTRA Locates Tandemly Repetitive Areas☆35Updated 3 weeks ago
- Improved Phased Assembler☆28Updated 3 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- ☆10Updated 5 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- recompute GFA link overlaps☆25Updated 3 years ago
- Human pan-genome analysis pipeline☆31Updated 5 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 4 months ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- ☆32Updated 2 years ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 2 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆32Updated 3 weeks ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆33Updated last year
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Updated 5 years ago
- A more efficient quality control tool for sequencing data☆31Updated 5 months ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago