RitchieLabIGH / iMOKALinks
interactive Multi Objective K-mer Analysis
☆23Updated 2 years ago
Alternatives and similar repositories for iMOKA
Users that are interested in iMOKA are comparing it to the libraries listed below
Sorting:
- Detect and phase minor SNVs from long-read sequencing data☆13Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated last month
- ☆10Updated 5 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- ☆16Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- Gene copy number prediction from k-mer frequencies☆13Updated last year
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Lift-over alignments from variant-aware references☆35Updated 2 years ago
- Human pan-genome analysis pipeline☆30Updated 5 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- Convert HAL to VG☆22Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- General purpose utility related to GAF files☆29Updated 2 weeks ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Tumour-only somatic mutation calling using long reads☆27Updated 10 months ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- ☆26Updated 4 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Long-read aligner to pangenome graphs☆26Updated last year
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 8 months ago
- ☆14Updated 2 years ago