mcfrith / dnarrangeLinks
☆16Updated 11 months ago
Alternatives and similar repositories for dnarrange
Users that are interested in dnarrange are comparing it to the libraries listed below
Sorting:
- Location of public benchmarking; primarily final results☆18Updated 10 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- ☆13Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- Run multiple programs to check if a VCF is usable☆11Updated 5 years ago
- Split a BAM file by haplotype support☆16Updated 8 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Sample Contamination Estimate from VCF☆20Updated last year
- A python wrapper around SURVIVOR☆20Updated last year
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 4 years ago
- ☆20Updated 2 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 4 years ago
- ☆12Updated 4 years ago
- Benchmarking variant calling in polyploids☆15Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated last month
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Benchmark structural variant calls against a reference set☆18Updated last month
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆12Updated 6 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated 6 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- ☆33Updated 3 years ago
- Automated Detection and Qualification of Differential Methylation☆16Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Updated 6 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last month
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 4 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago