mcfrith / dnarrange
☆16Updated this week
Alternatives and similar repositories for dnarrange:
Users that are interested in dnarrange are comparing it to the libraries listed below
- Location of public benchmarking; primarily final results☆18Updated 2 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆18Updated last week
- Structural variant (SV) analysis tools☆35Updated 6 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆15Updated 9 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 9 months ago
- A long-read analysis toolbox for cancer and population genomics☆21Updated 10 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆24Updated 3 weeks ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- Sample Contamination Estimate from VCF☆19Updated 2 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated last year
- Population-wide Deletion Calling☆35Updated 4 months ago
- A python wrapper around SURVIVOR☆20Updated 11 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated 2 months ago
- Codes for the Iso-Seq variant-calling paper☆11Updated last year
- Split a BAM file by haplotype support☆16Updated 7 years ago
- VCF files of SVs using long-read sequencing (LRS).☆21Updated 3 years ago
- ☆12Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆30Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆29Updated last month
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆18Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago