Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
☆24Jan 16, 2024Updated 2 years ago
Alternatives and similar repositories for maegatk
Users that are interested in maegatk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- mgatk: mitochondrial genome analysis toolkit☆116Jul 8, 2026Updated last month
- Scripts to reproduce the analysis of the MAESTER paper (https://www.nature.com/articles/s41587-022-01210-8).☆14May 18, 2024Updated 2 years ago
- Toolbox for single-cell data analysis on sample level☆27Updated this week
- Tool for modelling of mitochondrial heteroplasmy☆21Jul 16, 2024Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆32Jun 24, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- physics-informed neural network based method for solving single-cell population dynamics☆17Jun 23, 2026Updated 2 months ago
- ☆13Apr 16, 2021Updated 5 years ago
- ☆26Jul 15, 2026Updated last month
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆36Jan 4, 2022Updated 4 years ago
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆22Jan 15, 2023Updated 3 years ago
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆34Feb 22, 2018Updated 8 years ago
- ☆18Feb 25, 2022Updated 4 years ago
- Removing empty droplets in multiome datasets☆17Jun 3, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Multi-omic velocity inference☆120Oct 23, 2024Updated last year
- Analysis for BICCN cross-species primary motor cortex project☆24Feb 13, 2024Updated 2 years ago
- ☆12May 29, 2024Updated 2 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- ☆13Nov 3, 2023Updated 2 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆20Jan 18, 2026Updated 7 months ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- ☆15May 16, 2019Updated 7 years ago
- A flexible and fast sgRNA counter from FASTQ Files☆12Jun 17, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- 🛜 A lightweight immune repertoire browser☆28Dec 10, 2019Updated 6 years ago
- Non-parametric density inference for single-cell analysis.☆75Jul 28, 2026Updated last month
- Mosaic single cell data integration using non-overlapping features☆39Sep 20, 2022Updated 3 years ago
- Code used for muti cellular factor analysis☆20Dec 13, 2023Updated 2 years ago
- Benchmark of GRNs using the GRETA pipeline☆33Jun 9, 2026Updated 2 months ago
- Single-cell differential expression☆19Apr 23, 2026Updated 4 months ago
- Cell cycle inference in single-cell RNA-seq☆52Apr 25, 2023Updated 3 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆26Aug 20, 2024Updated 2 years ago
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆24Feb 4, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆26Sep 23, 2024Updated last year
- The R Bioconductor package for scMAGeCK.☆13Jul 10, 2026Updated last month
- A Toolkit for Single Cell Spatiotemporal Dynamical Generative Modeling☆18Jun 30, 2026Updated 2 months ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Jun 10, 2022Updated 4 years ago
- Clone identification from single-cell data☆67Nov 10, 2022Updated 3 years ago
- ☆42Aug 29, 2025Updated last year
- MTAE-based 5UTR design model☆11Jan 23, 2024Updated 2 years ago