caleblareau / maegatkLinks
Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
☆24Updated 2 years ago
Alternatives and similar repositories for maegatk
Users that are interested in maegatk are comparing it to the libraries listed below
Sorting:
- ☆39Updated 5 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 10 months ago
- cell type specific, trait-associated gene regulation☆29Updated 10 months ago
- ☆33Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- Single-cell Case Control Analysis☆52Updated this week
- Paired Insertion Counting for snATAC-seq data☆19Updated 8 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- ☆12Updated 2 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- ☆53Updated 2 years ago
- ☆53Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated 2 months ago
- Ordering gene-expression and functional events in single-cell experiments☆29Updated last year
- ☆41Updated 7 months ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated 2 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆46Updated 5 months ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆28Updated 4 years ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Updated 2 years ago
- ☆23Updated 2 years ago
- Parse ArchR arrow files to anndata h5ad☆16Updated 2 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated 2 years ago
- .h5mu files interface for Seurat☆32Updated 2 years ago
- Information-based dimensionality reduction☆29Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated this week
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 3 years ago