☆18Jun 2, 2022Updated 4 years ago
Alternatives and similar repositories for Perturb-CITE-seq
Users that are interested in Perturb-CITE-seq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Variant impact phenotyping using Perturb-seq☆10Apr 22, 2024Updated 2 years ago
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 3 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆39Aug 7, 2026Updated last week
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 2 years ago
- Code repository for the snRNA-seq cross-tissue atlas project☆21Feb 22, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tools for sgRNA calling in direct capture Perturb-seq data☆42Jun 18, 2023Updated 3 years ago
- Tutorial for using the perturbseq library to load and manipulate experiments☆24Aug 7, 2019Updated 7 years ago
- Paired-seq☆15Jul 17, 2024Updated 2 years ago
- Perturb-seq analysis package☆16May 2, 2024Updated 2 years ago
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 5 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- The code for the paper *The Sensitivity of Counterfactual Fairness to Unmeasured Confounding* @ UAI 2019☆14Apr 4, 2020Updated 6 years ago
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 3 years ago
- Theano-based Deep Learning library (convnets, recurrent neural networks, and more).☆14Aug 2, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Advanced steps of the OSCA book☆16Jul 28, 2026Updated 3 weeks ago
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 5 years ago
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆11Jul 31, 2026Updated 2 weeks ago
- ☆10May 31, 2022Updated 4 years ago
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆95Jul 23, 2024Updated 2 years ago
- Expectation pooling: An effective and interpretable method of pooling for predicting DNA-protein binding☆17Sep 21, 2019Updated 6 years ago
- ☆10Mar 11, 2025Updated last year
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆98Jul 31, 2019Updated 7 years ago
- Identifying cell subpopulational differences among single-cell biospecimens☆17Sep 27, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code for the paper "Local Causal Discovery for Estimating Causal Effects".☆12Apr 9, 2024Updated 2 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Fast algorithms for GLM-PCA.☆17Mar 12, 2025Updated last year
- Code and example of the D-SPIN framework☆40Aug 5, 2026Updated last week
- HiCDCPlus☆19Jun 6, 2022Updated 4 years ago
- Tools for handling HiC and 5C data☆24Feb 5, 2024Updated 2 years ago
- R package for analysis of single-cell data using graphs☆11Jun 8, 2023Updated 3 years ago
- ☆62Apr 5, 2024Updated 2 years ago
- A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for M…☆11Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- 4th Year project aiming to implement PC, FCI and RFCI algorithms in python☆14Apr 29, 2019Updated 7 years ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆71Jun 6, 2020Updated 6 years ago
- Code for the causal benchmark library☆13Mar 11, 2025Updated last year
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Aug 3, 2026Updated 2 weeks ago
- Ancestral Causal Inference (ACI)☆14May 24, 2017Updated 9 years ago
- Individual level Differential Expression Analysis for Single cells☆27Dec 24, 2022Updated 3 years ago