☆17Jun 2, 2022Updated 4 years ago
Alternatives and similar repositories for Perturb-CITE-seq
Users that are interested in Perturb-CITE-seq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Variant impact phenotyping using Perturb-seq☆10Apr 22, 2024Updated 2 years ago
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 3 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆38Updated this week
- Tutorial for using the perturbseq library to load and manipulate experiments☆24Aug 7, 2019Updated 6 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆41Jun 18, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Paired-seq☆15Jul 17, 2024Updated last year
- Perturb-seq analysis package☆16May 2, 2024Updated 2 years ago
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 4 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- The code for the paper *The Sensitivity of Counterfactual Fairness to Unmeasured Confounding* @ UAI 2019☆14Apr 4, 2020Updated 6 years ago
- Code and example of the D-SPIN framework☆36May 12, 2026Updated last month
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 3 years ago
- Theano-based Deep Learning library (convnets, recurrent neural networks, and more).☆14Aug 2, 2017Updated 8 years ago
- Advanced steps of the OSCA book☆14Apr 27, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 5 years ago
- ☆14Updated this week
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆13Jun 9, 2026Updated last week
- Repository for "The Landscape of Causal Discovery Data: Grounding Causal Discovery in Real-World Applications"☆15May 30, 2025Updated last year
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆69Jun 6, 2020Updated 6 years ago
- ☆10May 31, 2022Updated 4 years ago
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆95Jul 23, 2024Updated last year
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 2 years ago
- ☆10Mar 11, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Code for the paper "Local Causal Discovery for Estimating Causal Effects".☆12Apr 9, 2024Updated 2 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆98Jul 31, 2019Updated 6 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Fast algorithms for GLM-PCA.☆16Mar 12, 2025Updated last year
- HiCDCPlus☆19Jun 6, 2022Updated 4 years ago
- A single-cell transcriptomic analysis of endometriosis, endometriomas, eutopic endometrial samples and uninvolved ovary tissues highlight…☆18Jan 12, 2023Updated 3 years ago
- ☆17Jun 5, 2019Updated 7 years ago
- R package for analysis of single-cell data using graphs☆11Jun 8, 2023Updated 3 years ago
- Tools for handling HiC and 5C data☆24Feb 5, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆62Apr 5, 2024Updated 2 years ago
- Single-cell perturbation analysis☆328Updated this week
- Python experiment builder☆24Jan 23, 2018Updated 8 years ago
- A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for M…☆11Jun 10, 2026Updated last week
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- Code for the causal benchmark library☆13Mar 11, 2025Updated last year
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Apr 28, 2026Updated last month