klarman-cell-observatory / Perturb-CITE-seq
☆15Updated 2 years ago
Alternatives and similar repositories for Perturb-CITE-seq:
Users that are interested in Perturb-CITE-seq are comparing it to the libraries listed below
- Variant impact phenotyping using Perturb-seq☆9Updated 11 months ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆51Updated 4 years ago
- ACTIONet single-cell analysis framework☆38Updated 6 months ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 3 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 2 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆38Updated 6 months ago
- ☆15Updated last year
- Code and example of the D-SPIN framework☆19Updated last week
- Benchmark of GRNs using the GRETA pipeline☆23Updated last week
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- Learning meaningful representations of genes☆16Updated 5 months ago
- ☆25Updated 5 months ago
- Marker Selection by matching manifolds and elastic net☆23Updated 5 months ago
- Single Cell Consensus Clustering with Speed☆21Updated 2 years ago
- ☆26Updated last month
- Tools for sgRNA calling in direct capture Perturb-seq data☆32Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 7 months ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆26Updated last year
- ☆13Updated 5 years ago
- Reproducing result from the paper☆33Updated 3 years ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆22Updated 2 months ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆32Updated 9 months ago
- ☆24Updated 6 months ago
- ☆15Updated 8 months ago