klarman-cell-observatory / Perturb-CITE-seqLinks
☆15Updated 3 years ago
Alternatives and similar repositories for Perturb-CITE-seq
Users that are interested in Perturb-CITE-seq are comparing it to the libraries listed below
Sorting:
- Code and example of the D-SPIN framework☆24Updated last month
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- ☆56Updated last year
- ☆16Updated last year
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆58Updated 5 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- ☆16Updated 3 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Learning meaningful representations of genes☆19Updated 2 months ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆33Updated 2 weeks ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- ☆20Updated 4 years ago
- Deep Generative Modeling of RNA Velocity☆35Updated 4 months ago
- Conditional out-of-distribution prediction☆63Updated last year
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆21Updated 3 months ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Updated 2 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆11Updated 10 months ago
- Single Cell Consensus Clustering with Speed☆20Updated 2 years ago
- ACTIONet single-cell analysis framework☆42Updated last year
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Updated 3 years ago
- ☆60Updated last year
- Snakemake workflow to benchmark scRNA-seq data simulators☆13Updated 3 years ago
- ☆11Updated 6 years ago
- ☆29Updated 3 months ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Simultaneous deep generative modeling and clustering of single cell genomic data☆32Updated 2 years ago