YeoLab / qtoolsLinks
qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
☆21Updated last year
Alternatives and similar repositories for qtools
Users that are interested in qtools are comparing it to the libraries listed below
Sorting:
- ☆12Updated 6 years ago
- Distinguishing between generic and experiment-specific gene expression signals.☆12Updated 2 years ago
- Easily run WDL workflows on GCP☆13Updated 3 years ago
- A python script used to annotate genomic intervals.☆18Updated 5 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- ☆11Updated 8 years ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Updated 5 years ago
- ☆28Updated 6 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- A flexible python program for generating figures from regions of the genome.☆13Updated 6 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- A web application from the Raphael Lab for mutation annotation and genome interpretation.☆20Updated 7 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Updated 9 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated this week
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- ☆16Updated 5 months ago
- An R package to increase interpretability of genes and SNPs (eg identified from GWAS and eQTL mapping)☆10Updated 2 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Updated 9 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 4 years ago
- stageR package☆13Updated 2 years ago
- Unix-based RNA-seq quantification pipeline☆10Updated 9 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- ChIP-seq peak calling with GC effects adjustment☆9Updated 6 years ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆14Updated 11 years ago