qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
☆21Sep 20, 2023Updated 2 years ago
Alternatives and similar repositories for qtools
Users that are interested in qtools are comparing it to the libraries listed below
Sorting:
- Creating virtual environments for R.☆17Oct 24, 2019Updated 6 years ago
- Python bindings for WDL☆10Nov 9, 2017Updated 8 years ago
- ☆28Oct 5, 2018Updated 7 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Apr 19, 2016Updated 9 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Dec 23, 2025Updated 2 months ago
- Framework for running text mining tools on latest publications. Main page at:☆14Jul 13, 2022Updated 3 years ago
- Mark2Cure allows anyone that can read English, regardless of background, to help in the process of biomedical discovery.☆14Jan 11, 2023Updated 3 years ago
- Gene expression in neuroexpresso database☆18Oct 25, 2024Updated last year
- Quick access to gene synonyms☆29Updated this week
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Feb 13, 2018Updated 8 years ago
- Perform microbiome-wide association studies with a variety of models☆18Feb 14, 2017Updated 9 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆22May 25, 2021Updated 4 years ago
- Examples for the Google Genomics Pipelines API.☆50Dec 15, 2017Updated 8 years ago
- Grid Engine on Compute Engine provides a shell script to manage a Compute Engine cluster along with instructions on how to install and c…☆22Jan 8, 2018Updated 8 years ago
- ☆10Aug 29, 2023Updated 2 years ago
- Examples of great academic lab expectations, manuals, policies for joining and being in the lab☆51Jul 25, 2019Updated 6 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated last year
- Gene Expression Omnibus Analysis with Shiny☆40Jun 2, 2022Updated 3 years ago
- Image and VM management for Jenkins, Spark and Mesos clusters in EC2☆22Jul 24, 2020Updated 5 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 10 months ago
- ☆27Feb 4, 2026Updated 3 weeks ago
- ☆12Jan 31, 2023Updated 3 years ago
- Python Optimal Leaf Ordering for Hierarchical Clustering☆21Jun 21, 2017Updated 8 years ago
- ViReport analysis of COVID-19 using GISAID data☆20Sep 20, 2020Updated 5 years ago
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 5 years ago
- A R package to create a minimal template for scientific manuscripts in .docx☆11Jan 15, 2022Updated 4 years ago
- Generate HTML report for a set of genomic regions or DESeq2/edgeR results☆10Jan 14, 2025Updated last year
- Gene Expression Atlas☆21Dec 16, 2022Updated 3 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 2 years ago
- ☆26Oct 15, 2020Updated 5 years ago
- Find nodes in hierarchical clustering that are statistically significant☆32Oct 15, 2017Updated 8 years ago
- Utilities for large scale distributed single cell data processing☆24Jan 20, 2026Updated last month
- iDEP: integrated Differential Expression & Pathway analysis☆14Mar 1, 2019Updated 6 years ago
- Homebrew/science is deprecated☆11Jan 2, 2018Updated 8 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 10 years ago
- Framework for running bioinformatic workflows and pipelines using the Google Pipelines API as the underlying task-runner.☆12Mar 22, 2017Updated 8 years ago
- R package for easy access, manipulation, and analysis of the Monarch Initiative or other KGX-formatted knowledge graphs.☆17Feb 19, 2026Updated last week
- Definition of link data for TogoID☆14Updated this week