YeoLab / qtools
qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
☆21Updated last year
Alternatives and similar repositories for qtools:
Users that are interested in qtools are comparing it to the libraries listed below
- Exercises for training scientists to perform some RNA-seq analyses.☆11Updated 5 years ago
- ☆12Updated 5 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Updated 9 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- Distinguishing between generic and experiment-specific gene expression signals.☆12Updated last year
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- A server for maintaining high-throughput sequencing QC data☆13Updated last year
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Updated 8 years ago
- A python script used to annotate genomic intervals.☆18Updated 4 years ago
- A web application from the Raphael Lab for mutation annotation and genome interpretation.☆20Updated 6 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 6 years ago
- A flexible python program for generating figures from regions of the genome.☆13Updated 5 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 7 months ago
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Updated 4 years ago
- ☆13Updated 8 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 5 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- Easily run WDL workflows on GCP☆13Updated 3 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆14Updated 10 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- Library for visualising genomic features in Python.☆15Updated 7 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated last month
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 8 years ago