Alternatives and similar repositories for qtools

Users that are interested in qtools are comparing it to the libraries listed below

• NCBI-Hackathons / Pharmacogenomics_Prediction_Pipeline_P3
  ☆28Updated 7 years ago
• vals / python-gprofiler
  ☆12Updated 6 years ago
• SnakeChunks / SnakeChunks
  Modular blocks to build Snakemake workflows for reproducible NGS analyses
  ☆22Updated 6 years ago
• marcos-diazg / musica
  MuSiCa - Mutational Signatures in Cancer
  ☆23Updated last year
• broadinstitute / wdl-runner
  Easily run WDL workflows on GCP
  ☆14Updated 4 years ago
• sentisci / fheatmap
  R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…
  ☆11Updated 9 years ago
• xguse / blacktie
  Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline
  ☆26Updated 10 years ago
• seandavi / MachineLearningIntro
  Machine learning use cases for teaching
  ☆13Updated 8 years ago
• raphael-group / magi
  A web application from the Raphael Lab for mutation annotation and genome interpretation.
  ☆20Updated 7 years ago
• gmcvicker / draw_genes
  A flexible python program for generating figures from regions of the genome.
  ☆13Updated 6 years ago
• bioforensics / rsidx
  Library for indexing VCF files for random access searches by rsID
  ☆17Updated 4 months ago
• brentp / python-giggle
  python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.
  ☆15Updated 7 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• gmiaslab / pyiomica
  PyIOmica (pyiomica) is a Python package for omics analyses.
  ☆16Updated 2 months ago
• datarail / gr_metrics
  ☆15Updated 2 years ago
• hbc / NGS-Data-Analysis-long-course
  ☆11Updated 8 years ago
• Novartis / EQP-cluster
  Unix-based RNA-seq quantification pipeline
  ☆10Updated 10 years ago
• hammerlab / cohorts
  Utilities for analyzing mutations and neoepitopes in patient cohorts
  ☆20Updated 7 years ago
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 6 years ago
• bartongroup / AlmostSignificant
  A server for maintaining high-throughput sequencing QC data
  ☆13Updated 4 months ago
• roryk / bcbio.rnaseq
  Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …
  ☆24Updated 7 years ago
• gexijin / iDEP-old-version
  iDEP: integrated Differential Expression & Pathway analysis
  ☆14Updated 6 years ago
• flo-compbio / xlmhg
  XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.
  ☆13Updated 2 years ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated last year
• fikipollo / paintomics3
  Integrative visualization of multiple omic datasets onto KEGG pathways.
  ☆11Updated 4 years ago
• Singh-Lab / Differential-Mutation-Analysis
  Differential Mutation Analysis
  ☆11Updated 5 years ago
• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 8 years ago
• EmanuelGoncalves / crispy
  Python module to analyse CRISPR-based libraries
  ☆13Updated 4 years ago
• jrderuiter / geneviz
  Library for visualising genomic features in Python.
  ☆15Updated 8 years ago
• aritra90 / TeraPCA
  TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA featur…
  ☆15Updated 3 years ago