chaichontat / samui

Related projects ⓘ

Alternatives and complementary repositories for samui

• vitessce / vitessceR
  R API and htmlwidget for Vitessce
  ☆38Updated last month
• pachterlab / kite
  kallisto index tag extractor
  ☆20Updated 5 years ago
• rajewsky-lab / spacemake
  ☆39Updated this week
• RGLab / FAUST
  Full annotation using shape-constrained trees
  ☆25Updated last year
• pachterlab / SpatialFeatureExperiment
  Extension of SpatialExperiment with sf
  ☆43Updated this week
• almaan / eggplant
  ☆20Updated 2 years ago
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆19Updated this week
• immunogenomics / cdr3-QTL
  Trans-association between HLA and TCR-CDR3
  ☆15Updated last year
• ayshwaryas / ddqc
  Biology-centered data-driven quality control for scRNA-seq
  ☆15Updated last year
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆24Updated 10 months ago
• scverse / conference-2024
  Slides and Notebooks for scverse 2024
  ☆17Updated 2 months ago
• drighelli / SpatialExperiment
  ☆55Updated 4 months ago
• gokceneraslan / pyannotables
  Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)
  ☆11Updated last year
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆27Updated this week
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆21Updated this week
• pachterlab / voyager
  From geospatial to spatial -omics
  ☆79Updated this week
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆26Updated last year
• SydneyBioX / MoleculeExperiment
  ☆12Updated 5 months ago
• Nanostring-Biostats / SpatialOmicsOverlay
  Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
  ☆18Updated 6 months ago
• saezlab / mistyR
  Multiview Intercellular SpaTial modeling framework
  ☆49Updated 7 months ago
• kanaverse / scran.js
  Single cell analysis in Javascript
  ☆21Updated last month
• kstreet13 / scry
  Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).
  ☆19Updated 4 months ago
• scverse / anndataR
  AnnData interoperability in R
  ☆60Updated last week
• const-ae / transformGamPoi
  Variance stabilizing transformation for Gamma Poisson distributed data
  ☆21Updated last year
• klarman-cell-observatory / scPlot
  Single cell interactive plotting tools
  ☆23Updated 4 years ago
• saeyslab / spotless-benchmark
  A repository for benchmarking spatial deconvolution and mapping tools
  ☆27Updated last month
• Vivianstats / scLink
  Inferring gene co-expression networks from single cell gene expression data
  ☆24Updated 2 years ago
• KenLauLab / dropkick
  Automated cell filtering for single-cell RNA sequencing data
  ☆24Updated last year
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆18Updated last year
• NikolayOskolkov / NormalizeSingleCell
  Comparison of single cell normalization strategies
  ☆10Updated 3 years ago