Alternatives and similar repositories for samui

Users that are interested in samui are comparing it to the libraries listed below

• vitessce / vitessceR
  R API and htmlwidget for Vitessce
  ☆40Updated 8 months ago
• pachterlab / SpatialFeatureExperiment
  Extension of SpatialExperiment with sf
  ☆54Updated last week
• kanaverse / scran.js
  Single cell analysis in Javascript
  ☆21Updated 8 months ago
• gokceneraslan / pyannotables
  Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)
  ☆11Updated 2 years ago
• scverse / conference-2024
  Slides and Notebooks for scverse 2024
  ☆17Updated 9 months ago
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆26Updated 2 years ago
• SingleRust / SingleRust
  Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀
  ☆20Updated last week
• almaan / eggplant
  ☆22Updated 2 years ago
• libscran / scran.chan
  A slimmed down version of scran, based on the C++ library of the same name.
  ☆10Updated 8 months ago
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆44Updated 8 months ago
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated 2 weeks ago
• klarman-cell-observatory / scPlot
  Single cell interactive plotting tools
  ☆23Updated 5 years ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆29Updated 7 months ago
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆36Updated last month
• pachterlab / kite
  kallisto index tag extractor
  ☆20Updated 5 years ago
• estellad / SpatialExperimentIO
  Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.
  ☆14Updated last month
• immunogenomics / cdr3-QTL
  Trans-association between HLA and TCR-CDR3
  ☆17Updated 2 years ago
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆37Updated last month
• RGLab / FAUST
  Full annotation using shape-constrained trees
  ☆25Updated last year
• cellatlas / human
  ☆43Updated 7 months ago
• drighelli / SpatialExperiment
  ☆66Updated 3 weeks ago
• pachterlab / voyager
  From geospatial to spatial -omics
  ☆95Updated 3 months ago
• saeyslab / spotless-benchmark
  A repository for benchmarking spatial deconvolution and mapping tools
  ☆33Updated last month
• rajewsky-lab / spacemake
  ☆44Updated last week
• satijalab / panhumanpy
  ☆17Updated last month
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆27Updated 8 months ago
• Vivianstats / scLink
  Inferring gene co-expression networks from single cell gene expression data
  ☆24Updated 2 years ago
• SydneyBioX / MoleculeExperiment
  ☆12Updated last year
• saezlab / mistyR
  Multiview Intercellular SpaTial modeling framework
  ☆59Updated 2 weeks ago
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆21Updated 2 years ago