Alternatives and similar repositories for samui

Users that are interested in samui are comparing it to the libraries listed below

• broadinstitute / celldega
  Spatial omics analysis and visualization library
  ☆22Updated last week
• vitessce / vitessceR
  R API and htmlwidget for Vitessce
  ☆44Updated 5 months ago
• SydneyBioX / MoleculeExperiment
  ☆12Updated last year
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated 2 weeks ago
• pachterlab / kite
  kallisto index tag extractor
  ☆20Updated 6 years ago
• gokceneraslan / pyannotables
  Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)
  ☆11Updated last week
• pachterlab / SpatialFeatureExperiment
  Extension of SpatialExperiment with sf
  ☆57Updated 3 weeks ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆30Updated last year
• drighelli / SpatialExperiment
  ☆71Updated 8 months ago
• ayshwaryas / ddqc
  Biology-centered data-driven quality control for scRNA-seq
  ☆19Updated 2 years ago
• saeyslab / spotless-benchmark
  A repository for benchmarking spatial deconvolution and mapping tools
  ☆36Updated 8 months ago
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆36Updated 4 months ago
• almaan / eggplant
  ☆22Updated 3 years ago
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆32Updated 3 years ago
• korsunskylab / tessera
  ☆19Updated 3 weeks ago
• single-cell-data / SOMA
  A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
  ☆82Updated 2 weeks ago
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆28Updated 3 years ago
• saezlab / MOFAcell
  Code used for muti cellular factor analysis
  ☆16Updated 2 years ago
• scverse / formulaic-contrasts
  Build contrasts for models defined with formulaic
  ☆12Updated last week
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• Teichlab / TissueTag
  Python package to interactively annotate histological images within a jupyter notebook
  ☆18Updated 3 months ago
• HCA-integration / scAtlasTb
  Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases
  ☆47Updated last week
• ismms-himc / visium-clustergrammer2
  Spatial Transcriptomics Dashboard
  ☆27Updated 2 years ago
• scverse / conference-2024
  Slides and Notebooks for scverse 2024
  ☆17Updated last year
• ventolab / cellphonedbviz
  Interactive visualisation of CellphoneDB results
  ☆11Updated last year
• estellad / SpatialExperimentIO
  Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.
  ☆17Updated 4 months ago
• linnarsson-lab / loom-viewer
  Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format
  ☆37Updated last year
• pachterlab / voyager
  From geospatial to spatial -omics
  ☆100Updated last week
• Vivianstats / scLink
  Inferring gene co-expression networks from single cell gene expression data
  ☆28Updated 3 years ago
• quadbio / cell-annotator
  Automatically annotate cell types, consistently across samples.
  ☆18Updated last week