A performant scientific image visualization system.
☆36Mar 20, 2026Updated 2 months ago
Alternatives and similar repositories for samui
Users that are interested in samui are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Nov 16, 2025Updated 6 months ago
- Spatial omics analysis and visualization library☆24May 11, 2026Updated last week
- Python API and Jupyter widget for Vitessce☆66Apr 17, 2026Updated last month
- Slides and Notebooks for scverse 2024☆16Sep 24, 2024Updated last year
- Annotated multivariate observation data in R☆53Apr 1, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An introduction to OME-Zarr for big bioimaging data☆26May 14, 2026Updated last week
- kallisto index tag extractor☆19Jul 6, 2019Updated 6 years ago
- ☆34Oct 10, 2025Updated 7 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆43Updated this week
- Utilities for large scale distributed single cell data processing☆24Jan 20, 2026Updated 4 months ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Feb 7, 2019Updated 7 years ago
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆12Aug 3, 2023Updated 2 years ago
- ☆73May 28, 2025Updated 11 months ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆19Sep 19, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆12Mar 13, 2022Updated 4 years ago
- COMET Single-Cell Marker Detection tool☆34Jun 21, 2022Updated 3 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 5 years ago
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- ☆44May 14, 2026Updated last week
- Build contrasts for models defined with formulaic☆12Updated this week
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 2 months ago
- Fast phenograph, CyTOF☆26Aug 19, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Efficient stochastic gradient descent algorithms for the estimation of generalized matrix factorization models in R.☆13Dec 15, 2025Updated 5 months ago
- ☆71Jan 18, 2023Updated 3 years ago
- ITK IO for images stored in OME-Zarr format.☆11Sep 4, 2025Updated 8 months ago
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆85Apr 20, 2026Updated last month
- Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format☆38Jan 10, 2025Updated last year
- Automatically use the latest “vX.X.X” tag as version in your Python package☆13Updated this week
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Jan 6, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆28Updated this week
- zero-inflated negative binomial gene expression in R☆20Jan 31, 2018Updated 8 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆23Jul 10, 2024Updated last year
- Read fcs files.☆11Nov 13, 2025Updated 6 months ago
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆17May 11, 2026Updated last week
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Feb 2, 2026Updated 3 months ago
- A simple native R reader for Zarr Arrays☆50Updated this week