Alternatives and similar repositories for samui

Users that are interested in samui are comparing it to the libraries listed below

• vitessce / vitessceR
  R API and htmlwidget for Vitessce
  ☆42Updated last month
• broadinstitute / celldega
  Spatial omics analysis and visualization library
  ☆16Updated this week
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆28Updated 11 months ago
• scverse / conference-2024
  Slides and Notebooks for scverse 2024
  ☆17Updated 11 months ago
• pachterlab / kite
  kallisto index tag extractor
  ☆20Updated 6 years ago
• pachterlab / SpatialFeatureExperiment
  Extension of SpatialExperiment with sf
  ☆55Updated last month
• SydneyBioX / MoleculeExperiment
  ☆12Updated last year
• almaan / eggplant
  ☆22Updated 3 years ago
• saeyslab / spotless-benchmark
  A repository for benchmarking spatial deconvolution and mapping tools
  ☆34Updated 4 months ago
• saezlab / MOFAcell
  Code used for muti cellular factor analysis
  ☆14Updated last year
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆30Updated 10 months ago
• Nanostring-Biostats / SpatialOmicsOverlay
  Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
  ☆24Updated 2 months ago
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated last week
• ayshwaryas / ddqc
  Biology-centered data-driven quality control for scRNA-seq
  ☆18Updated 2 years ago
• drighelli / SpatialExperiment
  ☆70Updated 3 months ago
• korsunskylab / tessera
  ☆14Updated 3 weeks ago
• kanaverse / scran.js
  Single cell analysis in Javascript
  ☆23Updated last month
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆28Updated 2 years ago
• gokceneraslan / pyannotables
  Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)
  ☆11Updated 2 months ago
• Teichlab / TissueTag
  Python package to interactively annotate histological images within a jupyter notebook
  ☆17Updated 10 months ago
• Teichlab / sctk
  ☆41Updated last month
• korsunskylab / rcna
  R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)
  ☆15Updated 2 years ago
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 3 years ago
• bhuvad / SpaNorm
  R package for normalisation of spatial transcriptomics data
  ☆13Updated 3 months ago
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆32Updated last year
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆21Updated 2 years ago
• Mr-Milk / SpatialTis
  Spatial analysis toolkit for single cell multiplexed tissue data
  ☆30Updated last year
• AllenInstitute / mfishtools
  Building Gene Sets and Mapping mFISH Data
  ☆16Updated last month
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆37Updated 2 months ago
• HCA-integration / scAtlasTb
  Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases
  ☆39Updated this week