rockdeme / chrysalisLinks
Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.
☆17Updated 2 months ago
Alternatives and similar repositories for chrysalis
Users that are interested in chrysalis are comparing it to the libraries listed below
Sorting:
- Test genes for Spatial Variation☆14Updated 8 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆40Updated last month
- Nonnegative spatial factorization for multivariate count data☆59Updated 2 years ago
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆59Updated last week
- Identification of spatial homogeneous regions☆21Updated 7 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆29Updated 11 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆82Updated 3 weeks ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆86Updated last year
- Spatial Single-Cell Analysis Toolkit☆94Updated last month
- ☆38Updated last year
- ☆20Updated 4 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆35Updated this week
- ☆58Updated 3 weeks ago
- ☆36Updated 3 weeks ago
- ☆28Updated 10 months ago
- Web application demonstrating 3D modeling of spatial transcriptomics☆21Updated 8 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆37Updated 5 months ago
- ☆68Updated this week
- Spatial analysis of FISH data☆31Updated 3 months ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 2 months ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆20Updated 4 months ago
- CAST package☆40Updated 9 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆31Updated 3 weeks ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated 11 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆54Updated last month
- Spatial direct messaging detected by bivariate Moran☆27Updated last month
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated last year
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆27Updated last month
- ☆50Updated 3 months ago