Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.
☆19Jun 9, 2025Updated last year
Alternatives and similar repositories for chrysalis
Users that are interested in chrysalis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast reconstruction of spatial networks from bioimages.☆26Mar 27, 2026Updated 5 months ago
- ☆16Sep 1, 2023Updated 3 years ago
- Contrastive Poisson latent variable models (CPLVMs)☆11Feb 7, 2022Updated 4 years ago
- ☆13Apr 13, 2020Updated 6 years ago
- Map single-cell transcriptomes to copy number evolutionary trees.☆14Aug 18, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 3 years ago
- Scikit-learn compatible package for archetypal analysis.☆29Jun 16, 2026Updated 3 months ago
- stageR package☆13May 8, 2026Updated 4 months ago
- An interface for Nested Stochastic Block Model for single cell analysis☆39Sep 2, 2026Updated 3 weeks ago
- Deep exponential families for single-cell data.☆21Aug 17, 2026Updated last month
- Probabilistic contrastive principal component analysis (PCPCA)☆24Nov 7, 2021Updated 4 years ago
- ☆49Jun 3, 2026Updated 3 months ago
- A deme-based, spatially explicit model of intra-tumour population genetics☆21Jan 28, 2025Updated last year
- ☆17Nov 13, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆49Jan 28, 2026Updated 7 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆86Feb 17, 2025Updated last year
- ☆28May 22, 2025Updated last year
- Stitch multiple Visium slides together☆17Oct 16, 2025Updated 11 months ago
- Computational Framework to Analyse Spatial Heterogeneity in Visum, IMC or MIBI data sets☆12May 3, 2022Updated 4 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆33Jan 15, 2021Updated 5 years ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆20Dec 5, 2024Updated last year
- A Course on designing high-throughput experiments☆13Sep 25, 2024Updated last year
- Vaeda method for computational doublet annotation☆21Feb 1, 2026Updated 7 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- This repository contains the scripts developed for the analysis of CRC samples processed with the 10x VISIUM Spatial Transcriptomics tech…☆12Feb 7, 2023Updated 3 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆80Updated this week
- ☆16Jun 22, 2026Updated 3 months ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆35Nov 4, 2023Updated 2 years ago
- ☆22Aug 17, 2023Updated 3 years ago
- This python package is for transitioning bioconductor from SVN to git☆14Mar 15, 2023Updated 3 years ago
- Python wrapper for Caterva. Still preliminary.☆21Apr 10, 2023Updated 3 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Sep 2, 2026Updated 3 weeks ago
- A multi-view latent variable model with domain-informed structured sparsity for integrating noisy feature sets.☆37Jul 22, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Real-time feedback control microscopy for automation of optogenetic targeting☆17Sep 16, 2026Updated last week
- 🏘️ Hubness reduced nearest neighbor search for entity alignment with knowledge graph embeddings☆29Apr 23, 2024Updated 2 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Oct 8, 2025Updated 11 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆92Mar 20, 2025Updated last year
- Bayesian Segmentation of Spatial Transcriptomics Data☆215Jul 31, 2026Updated last month
- ☆20May 12, 2026Updated 4 months ago
- ☆21May 14, 2026Updated 4 months ago