Alternatives and similar repositories for rds2py

Users that are interested in rds2py are comparing it to the libraries listed below

• MangiolaLaboratory / HPCell
  Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R
  ☆13Updated 5 months ago
• nullranges / nullranges
  Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…
  ☆27Updated 2 months ago
• lianos / sparrow
  Take command of your set enrichment analyses.
  ☆21Updated this week
• shchurch / countland
  tools in python and R for analyzing biological count data, especially from single cell RNAseq
  ☆22Updated last year
• rnabioco / cellar
  scRNA-Seq analysis vignettes
  ☆9Updated 3 years ago
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆19Updated last year
• waldronlab / GSEABenchmarkeR
  Reproducible GSEA Benchmarking
  ☆13Updated 3 weeks ago
• GSEA-MSigDB / ssGSEA-gpmodule
  A GenePattern module for running the ssGSEA method
  ☆13Updated 3 months ago
• jorainer / ensembldb
  This is the ensembldb development repository.
  ☆35Updated 9 months ago
• gabrielodom / pathwayPCA
  integrative pathway analysis with modern PCA methodology and gene selection
  ☆11Updated last year
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆20Updated 10 months ago
• lgeistlinger / EnrichmentBrowser
  Seamless navigation through combined results of set-based and network-based enrichment analysis
  ☆20Updated 2 months ago
• gosling-lang / grosling
  R interface to 'Gos'
  ☆39Updated 2 years ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• csoneson / treeclimbR
  ☆20Updated last month
• cBioPortal / 2020-cbioportal-r-workshop
  Workshop materials for cBioPortal Webinar 5: API & R Client
  ☆19Updated 5 years ago
• moosa-r / rbioapi
  rbioapi: User-Friendly R Interface to Biologic Web Services' API
  ☆22Updated 4 months ago
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆22Updated this week
• csoneson / alevinQC
  Create QC and summary reports for Alevin output
  ☆32Updated last month
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆26Updated last year
• kpj / rwrap
  Seamlessly integrate R packages into Python.
  ☆21Updated 2 years ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 4 years ago
• malhamdoosh / EGSEA
  This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
  ☆10Updated last year
• insitro / AllelicSeries
  Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…
  ☆13Updated 2 months ago
• federicomarini / ideal
  Interactive Differential Expression AnaLysis - DE made accessible and reproducible
  ☆29Updated last month
• pachterlab / BBB
  Bioinformatics for Benched Biologists
  ☆22Updated 5 years ago
• tidyomics / tidyomicsBlog
  the manifesto, workshops and tutorials of the tidy transcriptomics
  ☆13Updated last month
• LTLA / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆27Updated 2 weeks ago
• lawremi / rtracklayer
  R interface to genome annotation files and the UCSC genome browser
  ☆33Updated 2 months ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆68Updated 3 weeks ago